RNA id: TU58849


Basic Information

Item Value
RNA id TU58849
length 208
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G51659
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3427566 ~ 3427773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCAACCCATATTTTTTGTTCCCCATCAAACGGCACATCATTTCTTTGGACCTGCAACTGTCTGTTATTAATAGTTTTATGATTTATAGGCAGAGGCTGGATGCAGCTCTGAACAGCCACATATACAATTATCCAATGTTCAGCCTATATGAATGCCATTTTCCTGCTGATCTCTACCTAAAAAAGACAAGACCATTTGTCTCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58829 lncRNA upstream 116097 3310954 ~ 3311469 (+) True G51639
TU58828 lncRNA upstream 118029 3309078 ~ 3309537 (+) True G51638
TU58827 lncRNA upstream 118807 3308526 ~ 3308759 (+) True G51637
TU58759 lncRNA upstream 136756 3287328 ~ 3290810 (+) True G51569
TU58775 lncRNA upstream 164607 3262336 ~ 3262959 (+) True G51585
TU58866 lncRNA downstream 167531 3595304 ~ 3599012 (+) True G51673
TU58938 lncRNA downstream 182462 3610235 ~ 3610474 (+) True G51734
TU58939 lncRNA downstream 182707 3610480 ~ 3610852 (+) True G51735
TU58940 lncRNA downstream 183305 3611078 ~ 3611277 (+) True G51736
TU58894 lncRNA downstream 184421 3612194 ~ 3612467 (+) True G51695
CI01000009_03335503_03355421.mRNA mRNA upstream 72140 3335503 ~ 3355426 (+) True CI01000009_03335503_03355421
CI01000009_03330968_03333405.mRNA mRNA upstream 94113 3330585 ~ 3333453 (+) True CI01000009_03330968_03333405
CI01000009_03313112_03329470.mRNA mRNA upstream 98056 3313112 ~ 3329510 (+) True CI01000009_03313112_03329470
CI01000009_03301176_03305406.mRNA mRNA upstream 121971 3301176 ~ 3305595 (+) True CI01000009_03301176_03305406
CI01000009_03276572_03283625.mRNA mRNA upstream 143560 3276572 ~ 3284006 (+) True CI01000009_03276572_03283625
CI01000009_03466999_03473248.mRNA mRNA downstream 39080 3466853 ~ 3473414 (+) True CI01000009_03466999_03473248
CI01000009_03650884_03661357.mRNA mRNA downstream 223111 3650884 ~ 3661357 (+) True CI01000009_03650884_03661357
CI01000009_03680266_03685634.mRNA mRNA downstream 252493 3680266 ~ 3685655 (+) True CI01000009_03680266_03685634
CI01000009_03689901_03697052.mRNA mRNA downstream 261557 3689330 ~ 3697470 (+) True CI01000009_03689901_03697052
CI01000009_03724620_03726787.mRNA mRNA downstream 295637 3723410 ~ 3727389 (+) True CI01000009_03724620_03726787
TU58746 other upstream 218582 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 219043 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 219260 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 219642 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 219642 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60796 other downstream 2094469 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 2107472 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 2432529 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 2817791 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 5701527 9129300 ~ 9130286 (+) True G56100

Expression Profile