Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU58866 |
| length | 751 |
| lncRNA type | antisense_over |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G51673 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3595304 ~ 3599012 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU58849 | lncRNA | upstream | 167531 | 3427566 ~ 3427773 (+) | True | G51659 |
| TU58829 | lncRNA | upstream | 283835 | 3310954 ~ 3311469 (+) | True | G51639 |
| TU58828 | lncRNA | upstream | 285767 | 3309078 ~ 3309537 (+) | True | G51638 |
| TU58827 | lncRNA | upstream | 286545 | 3308526 ~ 3308759 (+) | True | G51637 |
| TU58759 | lncRNA | upstream | 304494 | 3287328 ~ 3290810 (+) | True | G51569 |
| TU58938 | lncRNA | downstream | 11223 | 3610235 ~ 3610474 (+) | True | G51734 |
| TU58939 | lncRNA | downstream | 11468 | 3610480 ~ 3610852 (+) | True | G51735 |
| TU58940 | lncRNA | downstream | 12066 | 3611078 ~ 3611277 (+) | True | G51736 |
| TU58894 | lncRNA | downstream | 13182 | 3612194 ~ 3612467 (+) | True | G51695 |
| TU58874 | lncRNA | downstream | 42208 | 3641220 ~ 3643110 (+) | True | G51676 |
| CI01000009_03466999_03473248.mRNA | mRNA | upstream | 121890 | 3466853 ~ 3473414 (+) | True | CI01000009_03466999_03473248 |
| CI01000009_03335503_03355421.mRNA | mRNA | upstream | 239878 | 3335503 ~ 3355426 (+) | True | CI01000009_03335503_03355421 |
| CI01000009_03330968_03333405.mRNA | mRNA | upstream | 261851 | 3330585 ~ 3333453 (+) | True | CI01000009_03330968_03333405 |
| CI01000009_03313112_03329470.mRNA | mRNA | upstream | 265794 | 3313112 ~ 3329510 (+) | True | CI01000009_03313112_03329470 |
| CI01000009_03301176_03305406.mRNA | mRNA | upstream | 289709 | 3301176 ~ 3305595 (+) | True | CI01000009_03301176_03305406 |
| CI01000009_03650884_03661357.mRNA | mRNA | downstream | 51872 | 3650884 ~ 3661357 (+) | True | CI01000009_03650884_03661357 |
| CI01000009_03680266_03685634.mRNA | mRNA | downstream | 81254 | 3680266 ~ 3685655 (+) | True | CI01000009_03680266_03685634 |
| CI01000009_03689901_03697052.mRNA | mRNA | downstream | 90318 | 3689330 ~ 3697470 (+) | True | CI01000009_03689901_03697052 |
| CI01000009_03724620_03726787.mRNA | mRNA | downstream | 124398 | 3723410 ~ 3727389 (+) | True | CI01000009_03724620_03726787 |
| CI01000009_03760934_03761223.mRNA | mRNA | downstream | 161922 | 3760934 ~ 3761839 (+) | True | CI01000009_03760934_03761223 |
| TU58746 | other | upstream | 386320 | 3202772 ~ 3208984 (+) | False | CI01000009_03202999_03207060 |
| TU58751 | other | upstream | 386781 | 3202772 ~ 3208523 (+) | False | CI01000009_03202999_03207060 |
| TU58749 | other | upstream | 386998 | 3202772 ~ 3208306 (+) | False | CI01000009_03202999_03207060 |
| TU58745 | other | upstream | 387380 | 3202772 ~ 3207924 (+) | False | CI01000009_03202999_03207060 |
| TU58748 | other | upstream | 387380 | 3202905 ~ 3207924 (+) | True | CI01000009_03202999_03207060 |
| TU60796 | other | downstream | 1923230 | 5522242 ~ 5522356 (+) | False | G53388 |
| TU60791 | other | downstream | 1936233 | 5535245 ~ 5538095 (+) | False | G53388 |
| TU61110 | other | downstream | 2261290 | 5860302 ~ 5860756 (+) | True | G53655 |
| TU61103 | other | downstream | 2646552 | 6245564 ~ 6248392 (+) | True | G53651 |
| TU63847 | other | downstream | 5530288 | 9129300 ~ 9130286 (+) | True | G56100 |
