RNA id: TU60780


Basic Information

Item Value
RNA id TU60780
length 217
lncRNA type intronic
GC content 0.51
exon number 1
gene id G53383
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5409457 ~ 5409673 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTCAAGTCATGTAATTAACGCACTTGAATATTGGTCACTTAATACTGAAAATGCCATATGTTTCCTTTAGGGGACTGCTTGGCACTTGAAGACTGACAGACTGTCAGCACCACCTGTGACTCAATCTGTCTAACTGAAGTATGATGGTTTATTTGTTTGAGTCAAAATGTGTGACAACAAATTCACCCATGCACATGAGTCAACATATGGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60779 lncRNA upstream 693 5408444 ~ 5408764 (+) True G53382
TU60733 lncRNA upstream 7229 5399593 ~ 5402228 (+) True G53338
TU60748 lncRNA upstream 41507 5365850 ~ 5367950 (+) True G53352
TU60650 lncRNA upstream 364517 5044705 ~ 5044940 (+) True G53257
TU60649 lncRNA upstream 364953 5044288 ~ 5044504 (+) True G53256
TU60799 lncRNA downstream 112569 5522242 ~ 5530443 (+) False G53388
TU60787 lncRNA downstream 113562 5538980 ~ 5539054 (+) False CI01000009_05538212_05539688
TU60788 lncRNA downstream 113562 5528678 ~ 5529631 (+) False G53388
TU60789 lncRNA downstream 113562 5523642 ~ 5524643 (+) False CI01000009_05523743_05526184
TU60795 lncRNA downstream 113562 5540058 ~ 5540638 (+) True G53388
CI01000009_05384160_05398034.mRNA mRNA upstream 11420 5384160 ~ 5398037 (+) True CI01000009_05384160_05398034
CI01000009_05261948_05270622.mRNA mRNA upstream 138370 5261948 ~ 5271087 (+) True CI01000009_05261948_05270622
CI01000009_05194517_05218620.mRNA mRNA upstream 190705 5193998 ~ 5218752 (+) True CI01000009_05194517_05218620
CI01000009_05106385_05110040.mRNA mRNA upstream 299316 5104947 ~ 5110141 (+) True CI01000009_05106385_05110040
CI01000009_05102641_05105265.mRNA mRNA upstream 303646 5102582 ~ 5105811 (+) True CI01000009_05102641_05105265
CI01000009_05411199_05413237.mRNA mRNA downstream 1526 5411199 ~ 5413673 (+) True CI01000009_05411199_05413237
CI01000009_05418094_05487944.mRNA mRNA downstream 8306 5417979 ~ 5488501 (+) True CI01000009_05418094_05487944
CI01000009_05491807_05498189.mRNA mRNA downstream 82134 5491807 ~ 5498799 (+) True CI01000009_05491807_05498189
CI01000009_05502414_05506275.mRNA mRNA downstream 90298 5499971 ~ 5506275 (+) True CI01000009_05502414_05506275
CI01000009_05522736_05523662.mRNA mRNA downstream 113063 5522736 ~ 5523662 (+) False CI01000009_05522736_05523662
TU58746 other upstream 2200473 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 2200934 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 2201151 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 2201533 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 2201533 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60796 other downstream 112569 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 125572 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 450629 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 835891 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 3719627 9129300 ~ 9130286 (+) True G56100

Expression Profile