RNA id: TU60811


Basic Information

Item Value
RNA id TU60811
length 221
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G53396
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5554770 ~ 5554990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAATGTAGAGCGAACTCTGTGAGAGCAGGCAAAGGCGAGCTGCTCTGCTCGGCGTGATTGCAGAATATTATGTTTGTGGCGCTGAGAGTGAGTTTAGCACGTCTGCTTGTGTTAAGCGGTTTGTGCCTGAACGAGAGGCTTTTACGCAAACATTTGCCTTCCGTGCTGTTAACCCTCATGGTCTGTGTGTCATCTGAGAGACCCCACGGCCATTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60795 lncRNA upstream 14132 5540058 ~ 5540638 (+) True G53388
TU60798 lncRNA upstream 15043 5539453 ~ 5539727 (+) True CI01000009_05538212_05539688
TU60799 lncRNA upstream 15716 5522242 ~ 5530443 (+) False G53388
TU60787 lncRNA upstream 15716 5538980 ~ 5539054 (+) False CI01000009_05538212_05539688
TU60790 lncRNA upstream 16398 5535245 ~ 5538095 (+) False G53388
TU60817 lncRNA downstream 18644 5573634 ~ 5573866 (+) True G53402
TU61023 lncRNA downstream 27467 5582457 ~ 5582685 (+) True G53584
TU61075 lncRNA downstream 187262 5742252 ~ 5742466 (+) True G53632
TU61080 lncRNA downstream 191585 5746575 ~ 5746951 (+) True G53637
TU61133 lncRNA downstream 225594 5780584 ~ 5781118 (+) True G53676
CI01000009_05538212_05539688.mRNA mRNA upstream 15082 5538212 ~ 5539688 (+) False CI01000009_05538212_05539688
CI01000009_05523743_05526184.mRNA mRNA upstream 28521 5523743 ~ 5526249 (+) False CI01000009_05523743_05526184
CI01000009_05522736_05523662.mRNA mRNA upstream 31108 5522736 ~ 5523662 (+) False CI01000009_05522736_05523662
CI01000009_05502414_05506275.mRNA mRNA upstream 48495 5499971 ~ 5506275 (+) True CI01000009_05502414_05506275
CI01000009_05491807_05498189.mRNA mRNA upstream 55971 5491807 ~ 5498799 (+) True CI01000009_05491807_05498189
CI01000009_05685508_05688628.mRNA mRNA downstream 130518 5685508 ~ 5688633 (+) True CI01000009_05685508_05688628
CI01000009_05696405_05703318.mRNA mRNA downstream 140681 5695671 ~ 5703921 (+) True CI01000009_05696405_05703318
CI01000009_05704310_05721474.mRNA mRNA downstream 149003 5703993 ~ 5722006 (+) True CI01000009_05704310_05721474
CI01000009_05761849_05767932.mRNA mRNA downstream 205993 5760983 ~ 5768703 (+) True CI01000009_05761849_05767932
CI01000009_05772094_05781990.mRNA mRNA downstream 215633 5770623 ~ 5782227 (+) True CI01000009_05772094_05781990
TU60796 other upstream 15716 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 15716 5535245 ~ 5538095 (+) False G53388
TU58746 other upstream 2345786 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 2346247 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 2346464 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU61110 other downstream 305312 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 690574 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 3574310 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 4298369 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 6205796 11760786 ~ 11760858 (+) True G57782

Expression Profile