Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU61103 |
| length | 2541 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G53651 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 6245564 ~ 6248392 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU61126 | lncRNA | upstream | 1196 | 6215668 ~ 6244368 (+) | True | G53669 |
| TU61118 | lncRNA | upstream | 30104 | 6215073 ~ 6215460 (+) | True | G53661 |
| TU61123 | lncRNA | upstream | 149959 | 6065067 ~ 6095605 (+) | True | G53666 |
| TU61201 | lncRNA | upstream | 199841 | 6045521 ~ 6045723 (+) | True | G53733 |
| TU61191 | lncRNA | upstream | 209135 | 6036196 ~ 6036429 (+) | True | G53723 |
| TU61360 | lncRNA | downstream | 271507 | 6519899 ~ 6530269 (+) | True | G53886 |
| TU61364 | lncRNA | downstream | 288757 | 6537149 ~ 6537383 (+) | True | G53890 |
| TU61375 | lncRNA | downstream | 322019 | 6570411 ~ 6570613 (+) | True | G53901 |
| TU61377 | lncRNA | downstream | 328324 | 6576716 ~ 6577142 (+) | True | G53903 |
| TU61960 | lncRNA | downstream | 384152 | 6632544 ~ 6632778 (+) | True | G54433 |
| CI01000009_06212264_06213131.mRNA | mRNA | upstream | 31749 | 6212264 ~ 6213815 (+) | True | CI01000009_06212264_06213131 |
| CI01000009_06205817_06207701.mRNA | mRNA | upstream | 37853 | 6205817 ~ 6207711 (+) | True | CI01000009_06205817_06207701 |
| CI01000009_06195742_06204011.mRNA | mRNA | upstream | 41215 | 6195742 ~ 6204349 (+) | True | CI01000009_06195742_06204011 |
| CI01000009_06130188_06193279.mRNA | mRNA | upstream | 52160 | 6130064 ~ 6193404 (+) | True | CI01000009_06130188_06193279 |
| CI01000009_06002120_06017019.mRNA | mRNA | upstream | 227782 | 6002120 ~ 6017782 (+) | True | CI01000009_06002120_06017019 |
| CI01000009_06943591_06952628.mRNA | mRNA | downstream | 693232 | 6941624 ~ 6953067 (+) | True | CI01000009_06943591_06952628 |
| CI01000009_06975071_07009147.mRNA | mRNA | downstream | 726679 | 6975071 ~ 7009417 (+) | True | CI01000009_06975071_07009147 |
| CI01000009_07051811_07054331.mRNA | mRNA | downstream | 802326 | 7050718 ~ 7054625 (+) | True | CI01000009_07051811_07054331 |
| CI01000009_07091022_07092696.mRNA | mRNA | downstream | 842526 | 7090918 ~ 7092801 (+) | True | CI01000009_07091022_07092696 |
| CI01000009_07101768_07105835.mRNA | mRNA | downstream | 852877 | 7101269 ~ 7106009 (+) | True | CI01000009_07101768_07105835 |
| TU61110 | other | upstream | 312763 | 5860302 ~ 5860756 (+) | True | G53655 |
| TU60796 | other | upstream | 706510 | 5522242 ~ 5522356 (+) | False | G53388 |
| TU60791 | other | upstream | 706510 | 5535245 ~ 5538095 (+) | False | G53388 |
| TU58751 | other | upstream | 3037041 | 3202772 ~ 3208523 (+) | False | CI01000009_03202999_03207060 |
| TU63847 | other | downstream | 2880908 | 9129300 ~ 9130286 (+) | True | G56100 |
| TU64139 | other | downstream | 3604967 | 9853359 ~ 9853515 (+) | True | G56323 |
| TU65813 | other | downstream | 5512394 | 11760786 ~ 11760858 (+) | True | G57782 |
| TU65844 | other | downstream | 5685550 | 11933942 ~ 11935251 (+) | False | G57811 |
| TU65845 | other | downstream | 5685550 | 11933942 ~ 11935251 (+) | False | G57811 |
