RNA id: TU63847



Basic Information


Item Value
RNA id TU63847
length 874
RNA type TUCP
GC content 0.50
exon number 2
gene id G56100
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9129300 ~ 9130286 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGCTGTCCCCTCAAAATAACTAGGCACCCTCAGCTTCTTTAGCAAGGCAGTGGTCGTCTTGGAGGTGTGTTTGGGGTCGTTATCATGTTGGAATACTGCCCTGCGGCCCAGTCTCTGAAGGGAGGGGATCATGCTCTGCTTCAGTATGTCACAGTACATGTTGGCATTCATGGTTCCCTCAATGAACTGTAGCTCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACGTCTTTGTACTCCTCACCTGGTTACCGCCACACACACTTGACACCATCTGAACCAAATAAGTTTATCTTGGTCTCATCAGACCACAGGACATGGTTCCAGTAATCCATGTTCTTAGTCTGCTTGTCTTCAGCAAACTGTTTGCAGGCTTTCTTGTGCATCATCTTTAGAAGAGGCTTCCTTCTGGGACGACAGCCATGCAGACCAATTTGATGCAGTGTGCGGCATATGGTCTGAGCATTGACAGGCTGACCCCCCACCCCTTCAACCTCTGCAGCAATGCTGGCAGCACTCATACGTCTATTTCCCAAACACAACCTCTGGATATGACACTGAGCATGTGCACTCAACTTCTTTGGTCGACCATGGCGAGGCCTGTTCTGAGTGGAACCTGTCCTGTTAAACCGCTGTATGGTCTTGGCCACCGTGCTGCAGCTCAGTTTCAGGGTCTTGGCAATCTTCTTATAGCCTACGCCATCTTTATGTAGAGCAACAATTCTTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCGATAACACCAAATTTAACAAACCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63839 lncRNA upstream 39143 9089659 ~ 9090157 (+) True G56093
TU63798 lncRNA upstream 94656 9033839 ~ 9034644 (+) True G56073
TU63796 lncRNA upstream 95897 9033092 ~ 9033403 (+) True G56071
TU63794 lncRNA upstream 96507 9032201 ~ 9032793 (+) False G56070
TU63795 lncRNA upstream 96507 9032254 ~ 9032793 (+) True G56070
TU63862 lncRNA downstream 13854 9144140 ~ 9147877 (+) False G56113
TU63864 lncRNA downstream 13854 9144140 ~ 9170427 (+) False G56113
TU63865 lncRNA downstream 27806 9158092 ~ 9170427 (+) True G56113
TU63924 lncRNA downstream 98887 9229173 ~ 9229646 (+) True G56168
TU63925 lncRNA downstream 101045 9231331 ~ 9231772 (+) True G56169
CI01000009_08955749_09012630.mRNA mRNA upstream 116217 8954503 ~ 9013083 (+) True CI01000009_08955749_09012630
CI01000009_08940709_08944557.mRNA mRNA upstream 184743 8940443 ~ 8944557 (+) True CI01000009_08940709_08944557
CI01000009_08899091_08928547.mRNA mRNA upstream 200449 8897170 ~ 8928851 (+) True CI01000009_08899091_08928547
CI01000009_08863308_08868625.mRNA mRNA upstream 260176 8863308 ~ 8869124 (+) True CI01000009_08863308_08868625
CI01000009_08822338_08830986.mRNA mRNA upstream 296850 8822338 ~ 8832450 (+) True CI01000009_08822338_08830986
CI01000009_09212210_09214607.mRNA mRNA downstream 81645 9211931 ~ 9215286 (+) True CI01000009_09212210_09214607
CI01000009_09274252_09275727.mRNA mRNA downstream 143966 9274252 ~ 9275764 (+) True CI01000009_09274252_09275727
CI01000009_09277694_09278311.mRNA mRNA downstream 147408 9277694 ~ 9278510 (+) True CI01000009_09277694_09278311
CI01000009_09283776_09284378.mRNA mRNA downstream 153130 9283416 ~ 9284393 (+) True CI01000009_09283776_09284378
CI01000009_09288599_09289209.mRNA mRNA downstream 158313 9288599 ~ 9289224 (+) True CI01000009_09288599_09289209
TU61103 other upstream 2880908 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 3196499 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 3590246 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 3590246 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 5921376 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU64139 other downstream 723073 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 2630500 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 2803656 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 2803656 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 2803656 11933942 ~ 11935251 (+) True G57811

Expression Profile