RNA id: TU63924


Basic Information

Item Value
RNA id TU63924
length 474
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G56168
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9229173 ~ 9229646 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTATAAAGCCTTTCTGGACATAAAAGACAACTGAATAATGCTTCACGAGTTCACACTTACAAATAATCAGATAGTAAATAGTATGCGTAATAGTATGCGTATTTGGCGTGCTGTCCGAGGAGAGGGCTCCGAGCTCAGTATTTGGCCCGAACCCAGAGTACTCCCCCCGTATTTCTGGTTAGGAAAGTAACCAGAATATGGGTGAGTCAACTGTGTAAAACATATAAAGAATCCTGAATCATGATATTTAAAATGTGGCTGTAAAATAGCTTTAAAGGCCATTAAATTAGTCTTTACTGAGTCATTAACTTTTTTTTTTTTTTTTTTAAATAGCCTATATTTTATATATATTTTCTACTTAATTTATTTTATACTCTACAGTTCAAGTTATTGTGAAAGAAATTAAAAATTTTATTCAGAAAGGATGCATTAAATTGATCAAAAGAAGGGATGCACAATACCATTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63864 lncRNA upstream 58746 9144140 ~ 9170427 (+) False G56113
TU63865 lncRNA upstream 58746 9158092 ~ 9170427 (+) True G56113
TU63862 lncRNA upstream 81296 9144140 ~ 9147877 (+) False G56113
TU63839 lncRNA upstream 139016 9089659 ~ 9090157 (+) True G56093
TU63798 lncRNA upstream 194529 9033839 ~ 9034644 (+) True G56073
TU63925 lncRNA downstream 1685 9231331 ~ 9231772 (+) True G56169
TU63926 lncRNA downstream 2935 9232581 ~ 9232881 (+) True G56170
TU63927 lncRNA downstream 4897 9234543 ~ 9234776 (+) True G56171
TU63928 lncRNA downstream 9008 9238654 ~ 9243730 (+) True G56172
TU63932 lncRNA downstream 17083 9246729 ~ 9248371 (+) True G56175
CI01000009_09212210_09214607.mRNA mRNA upstream 13887 9211931 ~ 9215286 (+) True CI01000009_09212210_09214607
CI01000009_08955749_09012630.mRNA mRNA upstream 216090 8954503 ~ 9013083 (+) True CI01000009_08955749_09012630
CI01000009_08940709_08944557.mRNA mRNA upstream 284616 8940443 ~ 8944557 (+) True CI01000009_08940709_08944557
CI01000009_08899091_08928547.mRNA mRNA upstream 300322 8897170 ~ 8928851 (+) True CI01000009_08899091_08928547
CI01000009_08863308_08868625.mRNA mRNA upstream 360049 8863308 ~ 8869124 (+) True CI01000009_08863308_08868625
CI01000009_09274252_09275727.mRNA mRNA downstream 44606 9274252 ~ 9275764 (+) True CI01000009_09274252_09275727
CI01000009_09277694_09278311.mRNA mRNA downstream 48048 9277694 ~ 9278510 (+) True CI01000009_09277694_09278311
CI01000009_09283776_09284378.mRNA mRNA downstream 53770 9283416 ~ 9284393 (+) True CI01000009_09283776_09284378
CI01000009_09288599_09289209.mRNA mRNA downstream 58953 9288599 ~ 9289224 (+) True CI01000009_09288599_09289209
CI01000009_09291857_09292464.mRNA mRNA downstream 62211 9291857 ~ 9292464 (+) True CI01000009_09291857_09292464
TU63847 other upstream 98887 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 2980781 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 3296372 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 3690119 5522242 ~ 5522356 (+) False G53388
TU64139 other downstream 623713 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 2531140 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 2704296 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 2704296 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 2704296 11933942 ~ 11935251 (+) True G57811

Expression Profile