RNA id: TU64134


Basic Information

Item Value
RNA id TU64134
length 438
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G56320
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9668742 ~ 9669179 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGACTTTTCAACAATATGTATATGGGCTGATTTCAAAACACTGCTTCAGAGCTTTACGAATCGAATCAGTGAATCGGAGCGCCAAAGTCACGTGATTTCAGCAGTTTAGCCGTTTGATAGGAGATCCGAATCACTAATTCGAAACAAAAGATTCATAAAGCTCAGAAGCTTCATGAAGCAGTGTTTTGAAATCGGCCCATCACTAGATATTGTTGAAAAGTCATTATTTTGTTTTTTTGGCACACAAAAAGTATTCTTGTAGCTTTATAATATTAAGATAGAACCACTGAACCAATGAACTGTTTCAAATATGTTTTTTAGTACCTTTATGGATCTTGAGAGTTTCAATGGCTTTGCTCTCAATAGAGGCCTCACTGAGCCATCCGATTTCATCAACAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64119 lncRNA upstream 14016 9647928 ~ 9654726 (+) True G56306
TU64046 lncRNA upstream 180198 9488185 ~ 9488544 (+) True G56243
TU64045 lncRNA upstream 181934 9486599 ~ 9486808 (+) True G56242
TU64006 lncRNA upstream 184772 9482094 ~ 9483970 (+) True G56204
TU64028 lncRNA upstream 288948 9379585 ~ 9379794 (+) True G56225
TU64231 lncRNA downstream 196167 9865346 ~ 9865651 (+) True G56408
TU64201 lncRNA downstream 204053 9873232 ~ 9875702 (+) False G56383
TU64202 lncRNA downstream 204053 9873232 ~ 9876664 (+) False G56383
TU64200 lncRNA downstream 204135 9873314 ~ 9875702 (+) True G56383
TU64240 lncRNA downstream 223654 9892833 ~ 9895948 (+) False G56411
CI01000009_09542674_09559750.mRNA mRNA upstream 108705 9540212 ~ 9560037 (+) True CI01000009_09542674_09559750
CI01000009_09499329_09500173.mRNA mRNA upstream 168543 9499329 ~ 9500199 (+) True CI01000009_09499329_09500173
CI01000009_09490460_09493598.mRNA mRNA upstream 175109 9490460 ~ 9493633 (+) True CI01000009_09490460_09493598
CI01000009_09435601_09439347.mRNA mRNA upstream 229381 9435601 ~ 9439361 (+) True CI01000009_09435601_09439347
CI01000009_09390390_09394996.mRNA mRNA upstream 273420 9390390 ~ 9395322 (+) True CI01000009_09390390_09394996
CI01000009_09685457_09693885.mRNA mRNA downstream 16278 9685457 ~ 9693888 (+) True CI01000009_09685457_09693885
CI01000009_09700487_09709797.mRNA mRNA downstream 31308 9700487 ~ 9709983 (+) True CI01000009_09700487_09709797
CI01000009_09716074_09733349.mRNA mRNA downstream 45193 9714372 ~ 9734378 (+) True CI01000009_09716074_09733349
CI01000009_09770695_09782443.mRNA mRNA downstream 101516 9770695 ~ 9782536 (+) True CI01000009_09770695_09782443
CI01000009_09783235_09785477.mRNA mRNA downstream 114056 9783235 ~ 9785563 (+) True CI01000009_09783235_09785477
TU63847 other upstream 538456 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 3420350 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 3735941 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 4129688 5522242 ~ 5522356 (+) False G53388
TU64139 other downstream 184180 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 2091607 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 2264763 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 2264763 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 2264763 11933942 ~ 11935251 (+) True G57811

Expression Profile