Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU65948 |
| length | 596 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 1 |
| gene id | G57903 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 12473935 ~ 12474530 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU65945 | lncRNA | upstream | 3331 | 12470282 ~ 12470604 (+) | True | G57900 |
| TU65941 | lncRNA | upstream | 10983 | 12462546 ~ 12462952 (+) | True | G57896 |
| TU65935 | lncRNA | upstream | 18855 | 12454786 ~ 12455080 (+) | True | G57890 |
| TU65916 | lncRNA | upstream | 72883 | 12400478 ~ 12401052 (+) | True | G57871 |
| TU65735 | lncRNA | upstream | 101761 | 12305639 ~ 12372174 (+) | True | G57704 |
| TU65959 | lncRNA | downstream | 7214 | 12481744 ~ 12482032 (+) | True | G57911 |
| TU65787 | lncRNA | downstream | 54003 | 12528533 ~ 12594745 (+) | True | G57756 |
| TU65770 | lncRNA | downstream | 449463 | 12923993 ~ 12926242 (+) | True | G57739 |
| TU66059 | lncRNA | downstream | 565796 | 13040326 ~ 13047175 (+) | True | G58005 |
| TU66052 | lncRNA | downstream | 567283 | 13041813 ~ 13061580 (+) | False | G58004 |
| CI01000009_12432736_12435509.mRNA | mRNA | upstream | 38044 | 12432538 ~ 12435891 (+) | False | CI01000009_12432736_12435509 |
| CI01000009_12387605_12388405.mRNA | mRNA | upstream | 83270 | 12385222 ~ 12390665 (+) | True | CI01000009_12387605_12388405 |
| CI01000009_12351325_12366549.mRNA | mRNA | upstream | 107338 | 12351325 ~ 12366597 (+) | True | CI01000009_12351325_12366549 |
| CI01000009_12249416_12290497.mRNA | mRNA | upstream | 183337 | 12248963 ~ 12290598 (+) | True | CI01000009_12249416_12290497 |
| CI01000009_12198114_12221988.mRNA | mRNA | upstream | 251942 | 12196699 ~ 12221993 (+) | False | CI01000009_12198114_12221988 |
| CI01000009_12504532_12504815.mRNA | mRNA | downstream | 29850 | 12504380 ~ 12504894 (+) | True | CI01000009_12504532_12504815 |
| CI01000009_12646484_12653748.mRNA | mRNA | downstream | 171954 | 12646484 ~ 12653857 (+) | True | CI01000009_12646484_12653748 |
| CI01000009_12854692_12859028.mRNA | mRNA | downstream | 379663 | 12854193 ~ 12861031 (+) | True | CI01000009_12854692_12859028 |
| CI01000009_13194613_13197758.mRNA | mRNA | downstream | 719907 | 13194437 ~ 13199701 (+) | True | CI01000009_13194613_13197758 |
| CI01000009_13394582_13476351.mRNA | mRNA | downstream | 917776 | 13392306 ~ 13476807 (+) | True | CI01000009_13394582_13476351 |
| TU65740 | other | upstream | 37918 | 12434664 ~ 12436017 (+) | True | CI01000009_12432736_12435509 |
| TU65746 | other | upstream | 40851 | 12432558 ~ 12433084 (+) | False | CI01000009_12432736_12435509 |
| TU65844 | other | upstream | 538684 | 11933942 ~ 11935251 (+) | False | G57811 |
| TU65711 | other | downstream | 350939 | 12825469 ~ 12892339 (+) | False | G57682 |
| TU65712 | other | downstream | 387604 | 12862134 ~ 12892339 (+) | True | G57682 |
| TU65722 | other | downstream | 431914 | 12906444 ~ 12918465 (+) | True | G57691 |
| TU65732 | other | downstream | 532113 | 13006643 ~ 13023138 (+) | True | G57701 |
| TU66091 | other | downstream | 665848 | 13140378 ~ 13143608 (+) | True | G58028 |
