RNA id: TU65959


Basic Information

Item Value
RNA id TU65959
length 289
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G57911
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12481744 ~ 12482032 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGCTTATCTCCTGTTTGTCAAGTGTATGTTAGCCCACCTGTTTCACCAGCTCTCAGTTTCATTGGACTTTCCCTCTGATTAGACACTGTTCTACTTGTTGAGAGAGATTGTTTTTTTAGCTTGAACACTGAACATGATCTTTTCAGTTGGAACAGAATAAATAAAACACATTCTCCTCTGTGTTCAAGCTAAAGGAAAATGGGCACCAAAGTATAACATTTCAGACTTGAATAGTATTGATGATGACTCCATTTCTCCAAGGCAGTCTTGTATTTTTTGTATGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65948 lncRNA upstream 7214 12473935 ~ 12474530 (+) True G57903
TU65945 lncRNA upstream 11140 12470282 ~ 12470604 (+) True G57900
TU65941 lncRNA upstream 18792 12462546 ~ 12462952 (+) True G57896
TU65935 lncRNA upstream 26664 12454786 ~ 12455080 (+) True G57890
TU65916 lncRNA upstream 80692 12400478 ~ 12401052 (+) True G57871
TU65787 lncRNA downstream 46501 12528533 ~ 12594745 (+) True G57756
TU65770 lncRNA downstream 441961 12923993 ~ 12926242 (+) True G57739
TU66059 lncRNA downstream 558294 13040326 ~ 13047175 (+) True G58005
TU66052 lncRNA downstream 559781 13041813 ~ 13061580 (+) False G58004
TU66053 lncRNA downstream 561085 13043117 ~ 13051465 (+) False G58004
CI01000009_12432736_12435509.mRNA mRNA upstream 45853 12432538 ~ 12435891 (+) False CI01000009_12432736_12435509
CI01000009_12387605_12388405.mRNA mRNA upstream 91079 12385222 ~ 12390665 (+) True CI01000009_12387605_12388405
CI01000009_12351325_12366549.mRNA mRNA upstream 115147 12351325 ~ 12366597 (+) True CI01000009_12351325_12366549
CI01000009_12249416_12290497.mRNA mRNA upstream 191146 12248963 ~ 12290598 (+) True CI01000009_12249416_12290497
CI01000009_12198114_12221988.mRNA mRNA upstream 259751 12196699 ~ 12221993 (+) False CI01000009_12198114_12221988
CI01000009_12504532_12504815.mRNA mRNA downstream 22348 12504380 ~ 12504894 (+) True CI01000009_12504532_12504815
CI01000009_12646484_12653748.mRNA mRNA downstream 164452 12646484 ~ 12653857 (+) True CI01000009_12646484_12653748
CI01000009_12854692_12859028.mRNA mRNA downstream 372161 12854193 ~ 12861031 (+) True CI01000009_12854692_12859028
CI01000009_13194613_13197758.mRNA mRNA downstream 712405 13194437 ~ 13199701 (+) True CI01000009_13194613_13197758
CI01000009_13394582_13476351.mRNA mRNA downstream 910274 13392306 ~ 13476807 (+) True CI01000009_13394582_13476351
TU65740 other upstream 45727 12434664 ~ 12436017 (+) True CI01000009_12432736_12435509
TU65746 other upstream 48660 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509
TU65844 other upstream 546493 11933942 ~ 11935251 (+) False G57811
TU65711 other downstream 343437 12825469 ~ 12892339 (+) False G57682
TU65712 other downstream 380102 12862134 ~ 12892339 (+) True G57682
TU65722 other downstream 424412 12906444 ~ 12918465 (+) True G57691
TU65732 other downstream 524611 13006643 ~ 13023138 (+) True G57701
TU66091 other downstream 658346 13140378 ~ 13143608 (+) True G58028

Expression Profile