Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU66695 |
| length | 2662 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G58558 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 14496936 ~ 14501514 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU66574 | lncRNA | upstream | 22390 | 14469534 ~ 14471771 (+) | True | G58446 |
| TU66582 | lncRNA | upstream | 93467 | 14402649 ~ 14403582 (+) | True | G58454 |
| TU66575 | lncRNA | upstream | 94659 | 14393814 ~ 14402390 (+) | True | G58447 |
| TU66584 | lncRNA | upstream | 97698 | 14304940 ~ 14399351 (+) | True | G58456 |
| TU66577 | lncRNA | upstream | 219494 | 14264923 ~ 14277555 (+) | True | CI01000009_14264935_14273006 |
| TU66731 | lncRNA | downstream | 46736 | 14548250 ~ 14582261 (+) | True | G58591 |
| TU66705 | lncRNA | downstream | 71748 | 14573262 ~ 14584776 (+) | True | G58568 |
| TU66753 | lncRNA | downstream | 83542 | 14585056 ~ 14585281 (+) | True | G58613 |
| TU66754 | lncRNA | downstream | 83801 | 14585315 ~ 14585606 (+) | True | G58614 |
| TU66755 | lncRNA | downstream | 84176 | 14585690 ~ 14585910 (+) | True | G58615 |
| CI01000009_14474300_14474593.mRNA | mRNA | upstream | 22279 | 14474300 ~ 14474770 (+) | False | CI01000009_14474300_14474593 |
| CI01000009_14432830_14450364.mRNA | mRNA | upstream | 45507 | 14432716 ~ 14451542 (+) | True | CI01000009_14432830_14450364 |
| CI01000009_14380226_14386430.mRNA | mRNA | upstream | 110183 | 14380226 ~ 14386866 (+) | True | CI01000009_14380226_14386430 |
| CI01000009_14348389_14374515.mRNA | mRNA | upstream | 121366 | 14348389 ~ 14375683 (+) | True | CI01000009_14348389_14374515 |
| CI01000009_14296451_14314340.mRNA | mRNA | upstream | 182700 | 14296451 ~ 14314349 (+) | True | CI01000009_14296451_14314340 |
| CI01000009_14581261_14582899.mRNA | mRNA | downstream | 79366 | 14580880 ~ 14582994 (+) | True | CI01000009_14581261_14582899 |
| CI01000009_14595691_14611767.mRNA | mRNA | downstream | 93922 | 14595436 ~ 14612569 (+) | False | CI01000009_14595691_14611767 |
| CI01000009_14616605_14620028.mRNA | mRNA | downstream | 113857 | 14615371 ~ 14620238 (+) | True | CI01000009_14616605_14620028 |
| CI01000009_14659692_14664324.mRNA | mRNA | downstream | 157665 | 14659179 ~ 14664333 (+) | True | CI01000009_14659692_14664324 |
| CI01000009_14682045_14685381.mRNA | mRNA | downstream | 180140 | 14681654 ~ 14685420 (+) | True | CI01000009_14682045_14685381 |
| TU66583 | other | upstream | 238523 | 14246695 ~ 14258526 (+) | True | G58455 |
| TU66469 | other | upstream | 457148 | 14039798 ~ 14039901 (+) | True | G58382 |
| TU66462 | other | upstream | 457148 | 14039757 ~ 14039901 (+) | True | G58382 |
| TU66091 | other | upstream | 1353441 | 13140378 ~ 13143608 (+) | True | G58028 |
| TU65732 | other | upstream | 1473911 | 13006643 ~ 13023138 (+) | True | G57701 |
| TU66789 | other | downstream | 148210 | 14649724 ~ 14652022 (+) | True | G58649 |
| TU66854 | other | downstream | 265145 | 14766659 ~ 14773773 (+) | False | G58711 |
| TU66856 | other | downstream | 266426 | 14767940 ~ 14771757 (+) | True | G58711 |
| TU66845 | other | downstream | 317705 | 14819219 ~ 14837553 (+) | True | G58702 |
| TU66834 | other | downstream | 423715 | 14955242 ~ 14955795 (+) | True | G58694 |
