RNA id: CI01000012_06620470_06637571.mRNA



Basic Information


Item Value
RNA id CI01000012_06620470_06637571.mRNA
length 1470
RNA type mRNA
GC content 0.46
exon number 7
gene id CI01000012_06620470_06637571
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6620060 ~ 6637689 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATATAAAGTGGACCAACAGTTTATCATAAACAAGTCGACACTGAGAAAATTGTTTTTATTGAATAGGGCTCTAGTGTGTGGCACCTTCTCTCTCTATCCCCTCCCCGCGGGCAGGAAGAAAGACTTGACCCCTTGATTTACTTCCTGCTTCTCTGAAGCTGTTGTACTCCATCACACACACACACACACACACACGCTCAAGGACAGAGCAAGAGGACTCTGCATCCACACACTCCACTTCCTGCCGTCTTTGATTCATGGCTTTCATGGCTGAATGCTTAACAACCTAACAGAGACAAGGCCGACATCGAAATAGGCCTCTTTTTTATTTTACGGTCATATGTGAATTTATAATTCCACCCATCGAATGCGTTTAGATTAAAAAGCACTTTGTTAATGAATGACCACATGTTTTTTGCGATCGCGGTGTCATTGAAGTATTCTCCTTTAAAGGTGCACTTGGTGGAGTGTATTAGTGAGTCCCACTCGGCGGTGGACAGGCGGTGTCACACTGATGTGGACGAGCTGCCCTACTTTGGAAACACAGTGAAGGGGAGAGAGGAGCTTCTGAGGCCTGGGGTAACTCAAGCACATCTCTCGCTCTGTCTCTGTTCTTTCTCTTTCGCTCTATGGGTGAAAAAGGGGGCAGTGCCAGCGGGCACATTGGGGTGTCCAGGGGAAGGGGAGGGGCCCAGCTGTAGCGCTGCTTGGGAACGCTTACTTGCTCTGAGCTCTAGAGCTCCAGCAAACCGGCATCCCCCCAGCCATTGCCTCTGTGAGAGAGAGGGGCAAGAGGGGCAGACTCACTGGGACCCCCTACTGACTCCATACTGCTGGTGCTACTATTTCAGAAAGATCATTTTAAATGGGCAGGTTATCAAGGTTTTTTCAAGTTTAAATTCTTATCAGCATCAAAAGTGGTGGCAGAGATGCAAGGTGGGAATGTGCAGTTCAGATCAGGGATTCAACGCACCCCTCAACACAAGCATTGTGTCCTGCTTTGACCTCCATATGAAAAGCATTGCAGATACGGTGTCACAAAAGGCAATTTTGCGAGCTCAAACAGGGAAAGTAGTGAAAACAAATGAAAGAGATGATGATGAATGGGAAGTCTCTGACGAGATAATTAAAGAATCCATGAAAGTGGTAGAGCTTGCACAGGCTGGCTCCAAATCTCCAGTCCACTTCCAGGTGTGTATGAGTAAGCAACGGAATAAAACAACTTCAAACTTGAATTTAAACTACAAGAAATCTCAAAATGAGACTCTGGATCTTCGTACTAACATCAAAGACCTGTGGGAGAGTGAAAGTAAAGACAGGCTCTTGCAAGAACCTGTCAAGCGTCAGTAGTTTCAAAGTGTACGTTAAGAATCCCCTTCAACCAGGACAAGAGATTCCTCAGGTAACTAAGACTTACTTCAAGGGCTCTAGAAACGTTCAAACTTCTTAACATTCTCATACTTTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82951 lncRNA upstream 23543 6596394 ~ 6596517 (+) True G72725
TU82988 lncRNA upstream 58449 6557200 ~ 6561611 (+) True G72760
TU82929 lncRNA upstream 221420 6397486 ~ 6398640 (+) True G72713
TU82957 lncRNA upstream 223050 6396744 ~ 6397010 (+) True G72731
TU82956 lncRNA upstream 223357 6396397 ~ 6396703 (+) True G72730
TU83204 lncRNA downstream 204255 6841944 ~ 6842424 (+) True CI01000012_06826817_06842273
TU82985 lncRNA downstream 436977 7074666 ~ 7087621 (+) True G72757
TU83396 lncRNA downstream 593497 7231186 ~ 7231443 (+) True G73150
TU83482 lncRNA downstream 622137 7259826 ~ 7260038 (+) True G73223
TU83483 lncRNA downstream 623171 7260860 ~ 7261065 (+) True G73224
CI01000012_06441231_06476986.mRNA mRNA upstream 142956 6441192 ~ 6477104 (+) False CI01000012_06441231_06476986
CI01000012_06380300_06388370.mRNA mRNA upstream 231069 6380300 ~ 6388991 (+) True CI01000012_06380300_06388370
CI01000012_06334114_06368535.mRNA mRNA upstream 250969 6333349 ~ 6369091 (+) True CI01000012_06334114_06368535
CI01000012_06208439_06217101.mRNA mRNA upstream 402146 6208439 ~ 6217914 (+) True CI01000012_06208439_06217101
CI01000012_06182472_06192196.mRNA mRNA upstream 427447 6181007 ~ 6192613 (+) True CI01000012_06182472_06192196
CI01000012_06651665_06682236.mRNA mRNA downstream 13899 6651588 ~ 6682700 (+) True CI01000012_06651665_06682236
CI01000012_06826817_06842273.mRNA mRNA downstream 188234 6825923 ~ 6842529 (+) False CI01000012_06826817_06842273
CI01000012_06862144_06865773.mRNA mRNA downstream 223853 6861542 ~ 6866078 (+) True CI01000012_06862144_06865773
CI01000012_06938165_06970627.mRNA mRNA downstream 299901 6937590 ~ 6970901 (+) True CI01000012_06938165_06970627
CI01000012_06990634_06991686.mRNA mRNA downstream 352945 6990634 ~ 6991848 (+) True CI01000012_06990634_06991686
TU81687 other upstream 695755 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 803455 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 1058627 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 1079604 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 1081676 5535852 ~ 5538384 (+) True G71218
TU83614 other downstream 1168414 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 1729117 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 1729315 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 1729388 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 3584266 10221955 ~ 10222037 (+) True G75291

Expression Profile