RNA id: TCONS_00003017


Basic Information

Item Value
RNA id TCONS_00003017
length 1851
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_000059
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5311479 ~ 5313595 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTAATACTTATGACAAGAGTTTGTTCAAATGAGGTTGAGCAAGCACCATTACTAATAACATGCAGTCAAAGGTGCTAAATTTGACCCCAGGTACCTTGTGTCCTTTGTCCCTCCAGGCTCACCTTGTCAGCCTTCCAGACTTGGAGGCAAAGCCGTGTCAGAACAGCACTCATGTCTCCAACTAGAGGAAATTGATCTCTCAAGTCTGTCACACAACTATGAAGGGGCCAGGGGCTCAAGTGTCAGGTTACCGGAGGCAGGTGCAAACCCACCAATGGGGCTATGAATTGCAAGTGAGACTGTTCCCGATGGGTTGTCCCTGCAAAAAGAAACTTGTAAATAGTATGAAAGCGGGCCAACATGCCTTGGATTTCTCCAGTTCGGGTATACCtgaagaaggggaaaaaaaggaCCCTCTCCTGCCAAAGGTATCGTCTGCAAAATTAGCACAGGTGCAAGGTTTCGCACAACAAAGGACTCTTTGTGACTACCCGTGATCACGTTTTGTGACTAGGTTTCAATTTGGGAAAGAAAATGTAATATCTTAGAGAACAAACGTGGTTGGTTTGAAAAGCAGGGATACATTATCTAGATACAACTAACACCAGTTGTAAAGAAATAAGTCCCGGCTTACAATGTCATCTGCACATCGGGAACAGGAgcatggacatttctggagagaggCCAATACAAACAGAATTCCTTTCGCTTGGCATTCCAGCTTGATTAATATGGAAGGCTTGTAGGTAATTCGGCCAACAAGTGGTAAGTGTTGAGTGTTTCTCTTCATTGACACACATGGAGCGGAGTTCCACGATGTGGCCGCTGCTAATGCCTGCCTGCAGCCAAAATAGGAAGTCCCTGTGGCGAGACAGACCCATGCGCTCAGGCTGGAAAACCTCTCAACAACATCCTGTGGTCACCTGGACACTATGACCCAGAAGAAAGGACTCCTTAGAAAGCGGCCCCAGCAGCAGAGGCCTGCCTGAGGGCCCCTGAGGAGGAGAAGACATGCCATTCGGTGCATGCAAAGGGAGGAAGGCTTTGTAAATAACGTCCCTGGAATCCCAAGACTGCTTGCTTTTTAGTGCGCTCCCCCCTTTCCCAAAAAGGCTGAAGGGGAAGAATCGGATCAGAGGCAGCCTTGGGTTGTCACCTGCCTGGGATATGAGGGGGGTGGATGAAGACTGAACAGAAAATTAAAGAGAAGGAAGAGAGTGTGAGACAAAGAGAATCAGAGATGgcgagatagagagagaaaaccTTCCAGGTACTCTTAATTACTCTCGGAGGATAAATATTTCTTTAGTTATAGGGGTagagagacaaaaaaaatgaTGAGCTGTTCCAGGAGTGATTATCTTTCCGTTTTAGgtgtttttgaaaatattaaaagttCTTGTTTTACTGCTGGACAACTCCAAGAGATGTAACAAAACACACTACTACAGTATATGTTAAGTGGAGATTTGACTGACAAGCTGGCCAAATGAAGGTATAAGACCTTTGGAGGTTTTGCTCACCCAAAAACTTACCTGTTTGCCGTTGTGTCGTTACATATATTAccaataacacaggctcattttgaaaacgtaatcctatatacatttctggagatttctAATTAcatagccagaagtacgtatggctgcattttgtctttaaaacgaatgataCTGTGTGGTATGACGctattccttttcgcgcttaccatcTGGCCACTTACCTCCGTATTGactgctttcccgctgttaccagtttgtctagtagctcaccatgtacgttgacggacttgagacgcagagacaagttgaccatgacgatggaattcgagtctggtgaagaatgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002809 lncRNA upstream 281324 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00000113 lncRNA upstream 631002 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00003016 lncRNA upstream 1590876 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000101 lncRNA upstream 3011933 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00002808 lncRNA upstream 3287834 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00003019 lncRNA downstream 393375 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00003020 lncRNA downstream 481418 5795013 ~ 5799092 (+) False XLOC_000065
TCONS_00003021 lncRNA downstream 481440 5795035 ~ 5799092 (+) True XLOC_000065
TCONS_00000128 lncRNA downstream 848418 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000131 lncRNA downstream 858248 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000114 mRNA upstream 33896 5273481 ~ 5277583 (+) False XLOC_000058
TCONS_00000115 mRNA upstream 33902 5275811 ~ 5277577 (+) True XLOC_000058
TCONS_00000112 mRNA upstream 1157147 4101741 ~ 4154332 (+) True XLOC_000055
TCONS_00000110 mRNA upstream 2275460 2712956 ~ 3036019 (+) True XLOC_000052
TCONS_00000109 mRNA upstream 2867707 2431956 ~ 2443772 (+) True XLOC_000050
TCONS_00000116 mRNA downstream 88881 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000118 mRNA downstream 108844 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000119 mRNA downstream 108981 5422576 ~ 5426706 (+) True XLOC_000061
TCONS_00000122 mRNA downstream 172204 5485799 ~ 5504130 (+) False XLOC_000062
TCONS_00000124 mRNA downstream 262556 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000111 other upstream 1551445 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000104 other upstream 2869796 2301972 ~ 2441683 (+) False XLOC_000050
TCONS_00000108 other upstream 2908255 2403103 ~ 2403224 (+) True XLOC_000051
TCONS_00000102 other upstream 3008856 2301958 ~ 2302623 (+) False XLOC_000050
TCONS_00000100 other upstream 3011933 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000117 other downstream 88939 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000120 other downstream 123795 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other downstream 125148 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000123 other downstream 183690 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000134 other downstream 868747 6182342 ~ 6185532 (+) False XLOC_000067

Expression Profile

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