RNA id: TCONS_00000116


Basic Information

Item Value
RNA id TCONS_00000116
length 1616
RNA type mRNA
GC content 0.54
exon number 4
gene id XLOC_000060
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5402476 ~ 5419116 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTGTCCTCCATAAGCGTGGGCTGTGAGTGCTGCAGTGAGTGTGTTGCTCCTCCTCTGAGCTGCTGCTGTAGGTATAAAGTCAAGCTGCTATCAGCGAGTCTGTCAGACTGTCTCACTCATACCACATTACAGGTACGCAGTGAGAGGGCACGAACTCTTCTTAATACCTTCCCGGCAAAAAACAAATCCAACTCCAAAGCAAAATGCGTGAGTGTATCTCTGTGCATGTGGGGCAGGCTGGCGTCCAGATGGGCAACACCTGCTGGGAGCTCTACTGTCTGGAGCACGGCATCCAGCCGGACGGGCAGATGCCCAGCCACAAACCAGTGGGAGGACATGACGACTCCTTCACCACCTTCTTCAGTGAGACAGGAGCTGGCAAATATGTACCCCGGGCAATATTTGTAGACCTGGAGCCGACAGTCATTGATGAGGTCCGCACAGGCACTTACCGCCAGCTGTTTCACCCCGAGCAGCTCATCTCAGGAAAGGAGGATGCAGCAAATAACTACGCCCGCGGGCACTACACCATCGGCAAGGAGATCATTGACTCTGTGCTCGACCGCATTCGCAAACTGGCTGACCAATGCACAGGACTGCAAGGTTTCCTGGTCTTCCACAGTTTCGGTGGAGGCACGGGCTCAGGTTTCACCTCTCTTCTGATGGAGCGTCTCTCGGTCGACTTCGGGAAGAAGTCCAAGCTTGAGTTTGCCATTTACCCAGCTCCACAGGTGTCTACGGCTGTGGTGGAGCCGTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCCGACTGTGCCTTCATGGTGGACAACGAGGCCATTTATGACATCTGCAGGAGAAACCTGGATATCGAGCGCCCGTCCTACACCAACCTCAACCGGCTCATCAGTCAGATCGTGTCCTCCATCACCGCCTCTCTGCGCTTCGATGGCGCTTTAAACGTCGACCTGACGGAGTTCCAGACCAATTTAGTGCCCTACCCTCGCATCCACTTTCCTCTGGCCACATACGCTCCAGTCATCTCTGCTGAGAAAGCCTACCACGAGCAGCTCTCAGTGGCGGAGATCACCAACTCCTGCTTCGAGCCCAGCAACCAGATGGTGAAGTGCGACCCACGGCATGGGAAATACATGGCTTGCTGTTTGCTCTACAGGGGAGACGTGGTGCCGAAAGACGTCAACGTGGCCATCGCCGCCATCAAGACCAAGAGAAGCATCCAATTCGTGGACTGGTGTCCCACTGGATTCAAAGTGGGCATCAATTATCAGCCCCCGACTGTGGTTCCCGGTGGAGATCTGGCTAAAGTGCAAAGAGCCGTTTGCATGCTGAGCAACACCACTGCCATCGCTGAAGCTTGGGCTCGTCTGGACCACAAATTCGACCTGATGTACGCCAAGAGAGCCTTCGTGCACTGGTACGTGGGCGAGGGGATGGAGGAAGGCGAATTCTCTGAGGCTCGAGAAGATATGGCAGCTCTGGAGAAGGACTACGAAGAAGTGGGCATTGATTCGTTTGAGGAAGACGAGGAGGGGGAAGAGTTctaaaagagaaaagtgtttgtttgtttttctaccaaaaactaaataaagtaaaGCTTTAAATTGT

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1646 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a).

Ensembl:

ensembl_id ENSDART00000040204

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003018 lncRNA upstream 88881 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA upstream 88881 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00002809 lncRNA upstream 372321 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00000113 lncRNA upstream 721999 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00003016 lncRNA upstream 1681873 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00003019 lncRNA downstream 287854 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00003020 lncRNA downstream 375897 5795013 ~ 5799092 (+) False XLOC_000065
TCONS_00003021 lncRNA downstream 375919 5795035 ~ 5799092 (+) True XLOC_000065
TCONS_00000128 lncRNA downstream 742897 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000131 lncRNA downstream 752727 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000114 mRNA upstream 124893 5273481 ~ 5277583 (+) False XLOC_000058
TCONS_00000115 mRNA upstream 124899 5275811 ~ 5277577 (+) True XLOC_000058
TCONS_00000112 mRNA upstream 1248144 4101741 ~ 4154332 (+) True XLOC_000055
TCONS_00000110 mRNA upstream 2366457 2712956 ~ 3036019 (+) True XLOC_000052
TCONS_00000106 mRNA upstream 2958266 2301974 ~ 2444210 (+) False XLOC_000050
TCONS_00000118 mRNA downstream 3323 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000119 mRNA downstream 3460 5422576 ~ 5426706 (+) True XLOC_000061
TCONS_00000122 mRNA downstream 66683 5485799 ~ 5504130 (+) False XLOC_000062
TCONS_00000124 mRNA downstream 157035 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000125 mRNA downstream 716060 6135176 ~ 6158609 (+) False XLOC_000066
TCONS_00000111 other upstream 1642442 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000104 other upstream 2960793 2301972 ~ 2441683 (+) False XLOC_000050
TCONS_00000108 other upstream 2999252 2403103 ~ 2403224 (+) True XLOC_000051
TCONS_00000102 other upstream 3099853 2301958 ~ 2302623 (+) False XLOC_000050
TCONS_00000100 other upstream 3102930 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000120 other downstream 18274 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other downstream 19627 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000123 other downstream 78169 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000134 other downstream 763226 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000149 other downstream 1368574 6787690 ~ 6787804 (+) True XLOC_000078

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_02696797_02704180.mRNA True 1732 mRNA 0.52 5 CI01000299 2696632 ~ 2704220 (+)
bowfin (Amia calva) AMCG00001311 True 2364 mRNA 0.51 4 CM030137.1 24480969 ~ 24490636 (+)