RNA id: TU92635


Basic Information

Item Value
RNA id TU92635
length 286
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G81408
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5617826 ~ 5618111 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGTACTGTGATAGGTTGCCACCTGTGCAATAACTCCATTCATGAAATTTCCTCACTACTAAATATTCCATGGTCAACTGTTAGTGGTATCATAACAAAGTGGAAGCAACTGGGAACAACAGCAACTCAGCCACGAAGTGGTAGGCCACGTAAAATCACAGAGCGGGGTCAGTGCATGCTGAGGCGCACAGTGCGCCAACTTTCTGAGTCAATAGCTAGAGATCTCCAAACTTCGTGTGGCCTTCAGATTAGCTCAAGAACAGTGCGTAGAGAGCTTCATGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92631 lncRNA upstream 2576 5614904 ~ 5615250 (+) True G81404
TU92524 lncRNA upstream 39178 5513292 ~ 5578648 (+) True G81306
TU92520 lncRNA upstream 48287 5513292 ~ 5569539 (+) False G81306
TU92522 lncRNA upstream 48287 5513292 ~ 5569539 (+) False G81306
TU92607 lncRNA upstream 78882 5491058 ~ 5538944 (+) True G81380
TU92639 lncRNA downstream 3572 5621683 ~ 5625346 (+) True G81411
TU92640 lncRNA downstream 11519 5629630 ~ 5630428 (+) True G81412
TU92540 lncRNA downstream 39425 5657536 ~ 5672245 (+) True G81322
TU92649 lncRNA downstream 130675 5748786 ~ 5749042 (+) True G81421
TU92872 lncRNA downstream 143248 5761359 ~ 5761564 (+) True G81608
CI01000013_05607381_05608529.mRNA mRNA upstream 9256 5606883 ~ 5608570 (+) True CI01000013_05607381_05608529
CI01000013_05583328_05584677.mRNA mRNA upstream 33122 5583328 ~ 5584704 (+) True CI01000013_05583328_05584677
CI01000013_05572116_05579830.mRNA mRNA upstream 37687 5571340 ~ 5580139 (+) True CI01000013_05572116_05579830
CI01000013_05436977_05445492.mRNA mRNA upstream 172334 5436977 ~ 5445492 (+) True CI01000013_05436977_05445492
CI01000013_05402289_05403494.mRNA mRNA upstream 213899 5401587 ~ 5403927 (+) True CI01000013_05402289_05403494
CI01000013_05636898_05637901.mRNA mRNA downstream 18636 5636747 ~ 5638084 (+) True CI01000013_05636898_05637901
CI01000013_05698947_05741884.mRNA mRNA downstream 80836 5698947 ~ 5741884 (+) True CI01000013_05698947_05741884
CI01000013_05808968_05845757.mRNA mRNA downstream 190857 5808968 ~ 5846518 (+) True CI01000013_05808968_05845757
CI01000013_05847899_05849819.mRNA mRNA downstream 229788 5847899 ~ 5850194 (+) True CI01000013_05847899_05849819
CI01000013_05851074_05870330.mRNA mRNA downstream 232963 5851074 ~ 5870870 (+) True CI01000013_05851074_05870330
TU92027 other upstream 781594 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 1551997 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 2033042 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 3150655 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 4664857 946521 ~ 952969 (+) True G77695
TU92951 other downstream 438187 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 460451 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 1717834 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 2410227 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 3711218 9329329 ~ 9334948 (+) True G82581

Expression Profile