RNA id: TU128290


Basic Information

Item Value
RNA id TU128290
length 383
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G112928
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4091205 ~ 4100700 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACTAACCCTTTAAGATATGTGTTTTGTCTCCCTCTAGTGGACTCACAAGTGGATGCAGTTTTCCAGTCCTCTGGATCCAGGGCGTAAAAGTCTCGTGTTTGTACAACATGCTGGATGAGGGGACTACCGTGGTCTGATCCCAGACACCATCGTAGTTTTGCTGACGTGTCTCCAATCTCTTCCACGCGGATGCCACCCGGAGGACCAGGCAAGCCTTTGACAAAAACATCAGCTTCTGCGGTGGCGTTGTCCACTATAGTCTGAGCTGTGCAGATATAGTGTCCTGCATGCCTTACCTGAATATTCTTGATCAGCAGGTCTCCACTGTGCTCATTACCCTGCAAAAACACACACAAACAATGAAAGTACACTGTAAAAAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128281 lncRNA upstream 21698 4072422 ~ 4072638 (+) True G112919
TU128273 lncRNA upstream 34168 4059901 ~ 4060168 (+) True G112911
TU128259 lncRNA upstream 42733 3993021 ~ 4051603 (+) True G112897
TU128221 lncRNA upstream 108961 3975871 ~ 3985375 (+) True G112861
TU128206 lncRNA upstream 236072 3857758 ~ 3858264 (+) True G112848
TU128317 lncRNA downstream 8352 4103305 ~ 4159120 (+) True G112941
TU128331 lncRNA downstream 40191 4135144 ~ 4136916 (+) True G112955
TU128277 lncRNA downstream 75692 4170645 ~ 4171529 (+) True G112915
TU128363 lncRNA downstream 114674 4209627 ~ 4210089 (+) True G112980
TU128365 lncRNA downstream 115713 4210666 ~ 4210901 (+) True G112982
CI01000020_04005946_04011338.mRNA mRNA upstream 82853 4005739 ~ 4011483 (+) True CI01000020_04005946_04011338
CI01000020_03989813_04001907.mRNA mRNA upstream 91514 3989813 ~ 4002822 (+) True CI01000020_03989813_04001907
CI01000020_03985890_03988606.mRNA mRNA upstream 105400 3985890 ~ 3988936 (+) True CI01000020_03985890_03988606
CI01000020_03957225_03966342.mRNA mRNA upstream 127394 3957225 ~ 3966942 (+) True CI01000020_03957225_03966342
CI01000020_03848839_03853256.mRNA mRNA upstream 240706 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
CI01000020_04175433_04175851.mRNA mRNA downstream 80444 4175397 ~ 4175851 (+) True CI01000020_04175433_04175851
CI01000020_04186824_04192668.mRNA mRNA downstream 91465 4186418 ~ 4192880 (+) True CI01000020_04186824_04192668
CI01000020_04213624_04215676.mRNA mRNA downstream 118576 4213529 ~ 4216493 (+) True CI01000020_04213624_04215676
CI01000020_04226010_04238699.mRNA mRNA downstream 130089 4225042 ~ 4238923 (+) True CI01000020_04226010_04238699
CI01000020_04240295_04242117.mRNA mRNA downstream 145238 4240191 ~ 4242373 (+) True CI01000020_04240295_04242117
TU128103 other upstream 360750 3714381 ~ 3733586 (+) True G112753
TU128026 other upstream 790606 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1435423 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1644529 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1648780 2445064 ~ 2445556 (+) False G111173
TU128448 other downstream 331705 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 665059 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 712074 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 712074 4823772 ~ 4823786 (+) True G113036
TU128432 other downstream 712074 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453

Expression Profile