RNA id: CI01000021_06427686_06431101.mRNA



Basic Information


Item Value
RNA id CI01000021_06427686_06431101.mRNA
length 2332
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000021_06427686_06431101
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6427686 ~ 6431753 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCAAACCAGATATTACCTGCTTTTCCAGAATTAGTTGTGCATGAGGACCACAGCTCTGTAGGTGTAAGATGGAAAAAATGGCTACAACGGTTTGAGAATTTTCTACTGGCCATGGACATCAAAGATGACAAGAGGAAATGGGCTCAGAAAGCTGGAGAATCGCTTGACGCTTATCATACAAGGCTGAGACAATTAGCTGCAATGTGCCAATTCACTGACATTGACAGAGAGATCAAGACTATGATTATTCAAACGTGTAGCCTACATCAAGGGAGATCGTGCCCAGCAAAAGGTAAAATACGCCATGCATGTGGAAAGCAAGGGCATTTTGCTAAATGTTGCTGTTCAAAGCCACAGGGAGGCGCCAAAACCAAACGACAACTTCATTTGGTTCAAGCTGAGCCAGCTGTTACATCTGAAGAGGCATACCTTTACACAATTTCAGATGGAGGAAGTACCACATTACTTAGCTACGATACTGCTTCTCAGCTAGGTCTTATCAAAGTAGTGAACAGAGTGCAGTCCAAACAAGACGTGAATGTGCAAACTCCTCAGGTGCCTATTCGCATTCCCCACAACATACCCAATGTGAACTGCCTTCTTGCTGAGTACGATGACCTCTTCCAAGGCGTTGGCAAACTGAAGGACTTTCAAGTTAAACTTCACATCAATAAATCACACCAATACACATTCTCTGATGGAGGCTTCTCACCTGACCTTACAAAGCTCAAAGCACTTCAAGAGGTTGTTTCATCCAAAAACGTCAATGAACTGCGGAGTTTACTTGGCATGACAAACTACAGTGCTCGCTTCATCAAAGATTCTGCCTCCATTACGCAGCCACACTCAGCACACAATCTGGACATGTTTACTCTGGTAACTGATCACAAACCCCTTGAATGGATATTCAACAATCCAAAGTCAAAGCCACCTGCTAGGATAGAAAGGTGGAGTCTCCGGATGCAATCATATAATTTCATCGTTCAGTATAAGTCAGGAAAGGATAACCCTGCAGACTACATGTCTCGCCACCCCCTACAATATACTTCTACCTCACAATCAAACGTGGCTGATGAGTGTGCTGAGGATTATGTAAATTTCCTTGCTGCCATTGCTGTGCCGAAGGCCATGACGCTACAGGAAATACAACTCGCCAAAAAGAATGATGTGACCCTCTCTAAAGTTGCAGAACTCATCAAACATGGTGGGAGATTACTTCTTGTCGTGATTGATGAATATTCCAGGTATCCTGAGGTTGAGATTGTTCAGTCCACATCAGCTAAAAGTACCATTCCTAAGTTAGATAAGATTTTCTCATCTTTTGGTGTGTCTTCGGAAGTAAAAACGGACAATGGCCCACCTTTTAATGGACATGATTTTGCTGATTTTTCCTCATATTTAGGGTTCAAACACAGGAAAATCACCCCACTATGGCAGCAAGCAAACGCGGAAGCAGAGTGGTTTATGCGGATGCTGGAGAAAGCCATTCAAGCAGCTCATGTGGACAATTTACCATGGAAGCAAGTTTTGTACACTTTCCTTCGCAATTATCGTGCCACCCCACATTGTTCAACAAAAAAGTCACCTGCTGAAGCTTTGTTTGGAAGGCCCATACGCACGAAGCTACCTGAGCTGACATGTTTCGTCATACAGATGCTGCAGCAAAAGAAAAAATGAAATGGCAAAAAATGAGATGACGCCAAACCTTCAAACCTAAAGGTGGATGACATTGTTCTGTGTCGACGACAGAAGAGTGGGAAGCTCAGTTCAGCTTTTGAACCTCAGCCATACAAGGTGATTTCTGTAAAAGGGCCAGTGATCACAGCAGTCTCTGGCACTCGTAAGATCACAAGAAATCCATCACACTTCAAAGTTCTGTGTTCCTCAAAAATTCACACAGAAGGAAAAGAATAGGGAAGTAAAATGGATGATGGCTGGGAATTAAATATTCCAGGTCAAACCAAAACAGTAACACCAGCAACACCGCTTTCATCAGCAGCTGGTCTACAGTCACAGACTTCAGAGGTCAGAAGATATCCACAGAGAGAGCACAGAGGACCTCCAAGATGACTAGCAGATTATGAAATCCACAATTTATAAATTGAGGAACTCTTTGGATACTGAGTAAAATGTTCAATGTTCACTGTTAATGTTTATTTGATTCATATGAAAATATCTGAAGGTGAAGAGGATTGTAATGTTTAATGTTATGTTAATTATAGACACTAGGGGGCAGGAAAACATAGTTAAGGGTTTTGGGGGAGGCAACAAAAAGAGAAGTTAAGTGTGTTGAAATGCATGTGTGAAGTGCAGGGAGAGTACTGGAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135754 lncRNA upstream 26174 6401151 ~ 6401512 (+) True G119554
TU135624 lncRNA upstream 94100 6329280 ~ 6333586 (+) True G119426
TU135622 lncRNA upstream 103961 6318726 ~ 6323725 (+) True G119424
TU135629 lncRNA upstream 125112 6301508 ~ 6302574 (+) True G119431
TU135654 lncRNA upstream 215612 6211630 ~ 6212074 (+) True G119456
TU135734 lncRNA downstream 7214 6438967 ~ 6441879 (+) True G119534
TU135768 lncRNA downstream 22288 6454041 ~ 6454265 (+) True G119567
TU135771 lncRNA downstream 24015 6455768 ~ 6456020 (+) True G119570
TU135774 lncRNA downstream 26653 6458406 ~ 6458691 (+) True G119573
TU135778 lncRNA downstream 45023 6476776 ~ 6476999 (+) True G119577
CI01000021_06423446_06426296.mRNA mRNA upstream 78 6423446 ~ 6427608 (+) True CI01000021_06423446_06426296
CI01000021_06411964_06421511.mRNA mRNA upstream 6175 6411964 ~ 6421511 (+) True CI01000021_06411964_06421511
CI01000021_06408474_06411089.mRNA mRNA upstream 16597 6408474 ~ 6411089 (+) True CI01000021_06408474_06411089
CI01000021_06266751_06267607.mRNA mRNA upstream 159528 6264966 ~ 6268158 (+) True CI01000021_06266751_06267607
CI01000021_06077681_06095590.mRNA mRNA upstream 331960 6077409 ~ 6095726 (+) True CI01000021_06077681_06095590
CI01000021_06746518_06768316.mRNA mRNA downstream 314765 6746518 ~ 6768340 (+) False CI01000021_06746518_06768316
CI01000021_06773262_06780081.mRNA mRNA downstream 341509 6773262 ~ 6780081 (+) True CI01000021_06773262_06780081
CI01000021_06786996_06789224.mRNA mRNA downstream 355108 6786861 ~ 6790800 (+) False CI01000021_06786996_06789224
CI01000021_06798250_06824148.mRNA mRNA downstream 366497 6798250 ~ 6824486 (+) True CI01000021_06798250_06824148
CI01000021_06906415_06933563.mRNA mRNA downstream 474662 6906415 ~ 6934141 (+) True CI01000021_06906415_06933563
TU134547 other upstream 1538178 4842733 ~ 4886292 (+) True G118432
TU133514 other upstream 2392010 4033000 ~ 4035676 (+) True G117493
TU133500 other upstream 2469934 3956146 ~ 3957752 (+) True G117484
TU133183 other upstream 3099453 3269144 ~ 3328233 (+) False G117202
TU135922 other downstream 368391 6800144 ~ 6860606 (+) True G119701

Expression Profile