RNA id: TU137850


Basic Information

Item Value
RNA id TU137850
length 385
RNA type TUCP
GC content 0.41
exon number 2
gene id G121380
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 823733 ~ 826851 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCTTATGTCACAGCTGCCGCATGTTGTTGTTGAATCAGCACCGGCGAGGGTTTTTAACCAATAACTGATTTAAAATGACGGTGTTTCACGACGAGGTTGAAATAGAAGATTTTGAGTATGATGAAGAAACAGAAACATATTATTTTCCTTGTCCATGTGGTGACAGATTCGCGATAACGAAGGAGGATCTTGAGAATGGTGAAGATGTGGCCACCTGTCCGAGCTGTTCACTAATAGTTAAAGTAATCTATGATAAGGAGCAGTTCATGTGTGGAGAAGTAATTGAAGCACCAAGAACATCAGAAAACAAACTAGAGCTGGCCCAGAGCTGAGATATCAACATGGACTTAATACACACATCTGTCGTTTCACAGTTACTCACTACATATGCAGATCTTTTGTGAGGAAACTGACTGGATCTCATTAACTGATACGTTTTGCGCCCAGATTTTGCACATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137871 lncRNA downstream 165986 657431 ~ 657747 (-) True G121399
TU137870 lncRNA downstream 167123 656400 ~ 656610 (-) True G121398
TU137869 lncRNA downstream 168233 655266 ~ 655500 (-) True G121397
TU137839 lncRNA downstream 179040 625239 ~ 644693 (-) True G121376
TU137866 lncRNA downstream 185305 638002 ~ 638428 (-) True G121394
TU137884 lncRNA upstream 11844 838695 ~ 842019 (-) True G121412
TU137888 lncRNA upstream 19143 845994 ~ 848462 (-) True G121415
TU137896 lncRNA upstream 47576 874427 ~ 905944 (-) True G121423
TU139514 lncRNA upstream 554577 1381428 ~ 1385325 (-) True G122859
TU139518 lncRNA upstream 617735 1444586 ~ 1452856 (-) False G122860
CI01000024_00766380_00783144.mRNA mRNA downstream 39477 765081 ~ 784256 (-) True CI01000024_00766380_00783144
CI01000024_00758857_00762162.mRNA mRNA downstream 59954 758598 ~ 763779 (-) True CI01000024_00758857_00762162
CI01000024_00747057_00748859.mRNA mRNA downstream 74874 746731 ~ 748859 (-) True CI01000024_00747057_00748859
CI01000024_00697714_00714666.mRNA mRNA downstream 108420 697376 ~ 715313 (-) True CI01000024_00697714_00714666
CI01000024_00479343_00529567.mRNA mRNA downstream 294166 479296 ~ 529567 (-) True CI01000024_00479343_00529567
CI01000024_00871953_00893156.mRNA mRNA upstream 44838 871689 ~ 893156 (-) True CI01000024_00871953_00893156
CI01000024_00913269_00915063.mRNA mRNA upstream 86001 912852 ~ 915565 (-) True CI01000024_00913269_00915063
CI01000024_00931895_00936667.mRNA mRNA upstream 104891 931742 ~ 936831 (-) True CI01000024_00931895_00936667
CI01000024_00955186_00965837.mRNA mRNA upstream 127866 954717 ~ 966070 (-) True CI01000024_00955186_00965837
CI01000024_01258292_01261764.mRNA mRNA upstream 430428 1257279 ~ 1262033 (-) True CI01000024_01258292_01261764
TU139935 other upstream 1720609 2547460 ~ 2555036 (-) True G123233
TU140468 other upstream 3109191 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 6530386 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 6530854 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 6530903 7357754 ~ 7358104 (-) True G125457

Expression Profile