RNA id: CI01000024_00913269_00915063.mRNA


Basic Information

Item Value
RNA id CI01000024_00913269_00915063.mRNA
length 2332
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000024_00913269_00915063
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 912852 ~ 915565 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAACGGAGCAAGTGAAATCGCTGCGGCTAAATAACAAAAGAATTGAGGAAGAACCACGTTTAATATTTTTCCACTCGGTAACGGAACATACGTTTGGACTTATTATTTTTTAAGGGCAACTTATTCAAGCGCCAGAACTTTCTTGCGGGACAAAGTTTTTGAAACAATTTTTAATCTTTCTTTTTGTTTTTCTTTGCTTTTAAATAGAACGTATAGATTGAAGGACTGTTCGACTTTCGAGGGGTTTTCAACGCTGACATAAAACTGGAATTTATCGTTTTCATATGTTCGAAATATATGAATGCACAAAATATTCAAGAGACGGATTTCGTCTTCTCGCCTACAGTATCGTTCTCTTTGCTTTTTGTTGATGGTGTTTGCCAAAACACAAGCCAGACTTTTAAAGTTTGAATAATTCATGAGATATAATTTGCCTGCATTAAAAAAGTTTCTGCAAAAGGGAGGGGGTGACCAGCGAACATATTCATAAGGTTAGCGGAATGGCCACAGCGGCTTCCAACCCTTATCTACCCAGCAGTAGTATATTATCGTCCGGCTCGATCGTGCACTCGGACTCCGGGGGTGGGATGCAGCAGGGCAGTGCTGCGGTAACCTCAGTGTCCGGTGGGTACAGAGGAGACCCAACGGTTAAAATGGTACAAAGTGATTTTATGCAGGGCGCGATGGCAGCGAGCAACGGGGGACACATGCTGAGCCACGCTCACCAGTGGGTGACGTCCTTGCCTCACGCCGCAGCGGCGGCTGCAGCTGCCGCAGTTGCCGCAGCTGAAGCCGGATCGCCGTGGTCGTCTAGTCCCGTTGGAATGACAGGCAGCCCGCAACAGCAGCAGGACGTGAAAAATAACTCGGGGAGAGACGATTTGCACTCTGGGACTGCGCTGCATCACAGGCCCCCACATTTAGGTCCCCACCAGACTCACGCGGGCGCCTGGGGTAGCACAACCGCTGCCCACATCCCGTCGCTAACCGGGAGCCAACAGCAGCAGCAGTCCCTCATATACTCGCAGCCCGGCGGCTTCACGGTGAACGGCATGCTCAGTCCGCCGGGCAGCCAAAGCCTAGTACACCCGGGGCTGGACACGCCGACGTCGGATGACTTAGAGCACTTTGCCAAGCAGTTCAAACAGCGCCGGATCAAGCTGGGCTTCACGCAAGCGGACGTGGGCTTGGCGTTGGGCACTCTGTACGGGAACGTCTTCTCGCAGACCACGATCTGTCGCTTCGAAGCCCTCCAGCTCAGCTTTAAGAACATGTGCAAGCTGAAGCCGTTGCTTAACAAATGGCTGGAGGAAGCGGACTCTTCCACGGGCAGTCCCACCAGCATCGACAAGATCGCGGCTCAGGGCAGGAAGCGCAAGAAGCGCACCTCCATCGAAGTGAGCGTCAAAGGTGCGTTGGAGAGTCACTTCTTGAAATGTCCCAAGCCTTCGGCCCAAGAGATAACCAGCCTAGCGGACAACCTGCAGCTGGAGAAAGAGGTGGTCAGAGTTTGGTTTTGCAACCGGAGACAGAAGGAGAAAAGGATGACGCCCCCAGGAGTGCCGCAGACGCCGGAGGATGTGTATTCTCAGGTCGGCAATGTGAGTGCAGATACACCGCCCCCCTCCATGGACTGCAAACGAATGTTCAGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAGCGAACCGGGCGACCAGAGGGTGACAACTACAAGTTCGTTCCACCAGGTAATTTTGGCGCATTAACTTCAACTGAAAAATACAAGAAATTAGAAATGAACAACAAAATCTTTGACCCCCCCTTCCCTGTTACACCAATGTCTTGTTTGAGAGGCAAAAGACGCAGGCAATTGTGTATGTTGTTATGGGACATTAAACCTCAAACAAAGGGATGAAATTCAACCGAAACAATGCGAAGAACAGTGGCATCCACGAAGCTTCCATCCAACTTGGCAGAGAAGACTGCATGGTTTTGTTATTATCCAAAAATATGGAATGGATTTTTTTCTGGCCTTCCAATCCTTACAAAAACAACAAAAGACTGCCCTCAGTTTCTGATCTCCAAGATCTTTTTGAAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGTAAAGACACTGAATCTTACGTGGATTTTGAGGACAAAATGAAATCAAAGATGACTTTTGAAAAGACTGATTATTCCGCAGCTGCACCTCTTTGAAAATCTTCTGCGCGAACATCCGTTGCCAAGTGGGCCAGAGCTGGTGCTGTGGATGTTTTCATGTGCTGCCATTTCCAAGCAGTATTCTTTGGTAGGTTTTAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137896 lncRNA downstream 6908 874427 ~ 905944 (-) True G121423
TU137888 lncRNA downstream 64390 845994 ~ 848462 (-) True G121415
TU137884 lncRNA downstream 70833 838695 ~ 842019 (-) True G121412
TU137871 lncRNA downstream 255105 657431 ~ 657747 (-) True G121399
TU137870 lncRNA downstream 256242 656400 ~ 656610 (-) True G121398
TU139514 lncRNA upstream 465863 1381428 ~ 1385325 (-) True G122859
TU139518 lncRNA upstream 529021 1444586 ~ 1452856 (-) False G122860
TU139516 lncRNA upstream 535959 1451524 ~ 1452856 (-) True G122860
TU139582 lncRNA upstream 576286 1491851 ~ 1492211 (-) True G122923
TU139585 lncRNA upstream 586010 1501575 ~ 1505218 (-) True G122926
CI01000024_00871953_00893156.mRNA mRNA downstream 19696 871689 ~ 893156 (-) True CI01000024_00871953_00893156
CI01000024_00825386_00837898.mRNA mRNA downstream 74302 824968 ~ 838550 (-) False CI01000024_00825386_00837898
CI01000024_00766380_00783144.mRNA mRNA downstream 128596 765081 ~ 784256 (-) True CI01000024_00766380_00783144
CI01000024_00758857_00762162.mRNA mRNA downstream 149073 758598 ~ 763779 (-) True CI01000024_00758857_00762162
CI01000024_00747057_00748859.mRNA mRNA downstream 163993 746731 ~ 748859 (-) True CI01000024_00747057_00748859
CI01000024_00931895_00936667.mRNA mRNA upstream 16177 931742 ~ 936831 (-) True CI01000024_00931895_00936667
CI01000024_00955186_00965837.mRNA mRNA upstream 39152 954717 ~ 966070 (-) True CI01000024_00955186_00965837
CI01000024_01258292_01261764.mRNA mRNA upstream 341714 1257279 ~ 1262033 (-) True CI01000024_01258292_01261764
CI01000024_01405425_01412752.mRNA mRNA upstream 489510 1405075 ~ 1412752 (-) True CI01000024_01405425_01412752
CI01000024_01423879_01438170.mRNA mRNA upstream 508126 1423691 ~ 1438170 (-) True CI01000024_01423879_01438170
TU137850 other downstream 86001 823733 ~ 826851 (-) True G121380
TU139935 other upstream 1631895 2547460 ~ 2555036 (-) True G123233
TU140468 other upstream 3020477 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 6441672 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 6442140 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 6442189 7357754 ~ 7358104 (-) True G125457

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062511 False 3403 mRNA 0.46 1 NC_007117.7 14949950 ~ 14953352 (+)
bowfin (Amia calva) AMCG00014334 True 2106 mRNA 0.45 3 CM030128.1 9914125 ~ 9916789 (+)