Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU137888 |
| length | 1283 |
| lncRNA type | antisense_over |
| GC content | 0.40 |
| exon number | 3 |
| gene id | G121415 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 845994 ~ 848462 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU137884 | lncRNA | downstream | 3975 | 838695 ~ 842019 (-) | True | G121412 |
| TU137871 | lncRNA | downstream | 188247 | 657431 ~ 657747 (-) | True | G121399 |
| TU137870 | lncRNA | downstream | 189384 | 656400 ~ 656610 (-) | True | G121398 |
| TU137869 | lncRNA | downstream | 190494 | 655266 ~ 655500 (-) | True | G121397 |
| TU137839 | lncRNA | downstream | 201301 | 625239 ~ 644693 (-) | True | G121376 |
| TU137896 | lncRNA | upstream | 25965 | 874427 ~ 905944 (-) | True | G121423 |
| TU139514 | lncRNA | upstream | 532966 | 1381428 ~ 1385325 (-) | True | G122859 |
| TU139518 | lncRNA | upstream | 596124 | 1444586 ~ 1452856 (-) | False | G122860 |
| TU139516 | lncRNA | upstream | 603062 | 1451524 ~ 1452856 (-) | True | G122860 |
| TU139582 | lncRNA | upstream | 643389 | 1491851 ~ 1492211 (-) | True | G122923 |
| CI01000024_00825386_00837898.mRNA | mRNA | downstream | 7444 | 824968 ~ 838550 (-) | False | CI01000024_00825386_00837898 |
| CI01000024_00766380_00783144.mRNA | mRNA | downstream | 61738 | 765081 ~ 784256 (-) | True | CI01000024_00766380_00783144 |
| CI01000024_00758857_00762162.mRNA | mRNA | downstream | 82215 | 758598 ~ 763779 (-) | True | CI01000024_00758857_00762162 |
| CI01000024_00747057_00748859.mRNA | mRNA | downstream | 97135 | 746731 ~ 748859 (-) | True | CI01000024_00747057_00748859 |
| CI01000024_00697714_00714666.mRNA | mRNA | downstream | 130681 | 697376 ~ 715313 (-) | True | CI01000024_00697714_00714666 |
| CI01000024_00871953_00893156.mRNA | mRNA | upstream | 23227 | 871689 ~ 893156 (-) | True | CI01000024_00871953_00893156 |
| CI01000024_00913269_00915063.mRNA | mRNA | upstream | 64390 | 912852 ~ 915565 (-) | True | CI01000024_00913269_00915063 |
| CI01000024_00931895_00936667.mRNA | mRNA | upstream | 83280 | 931742 ~ 936831 (-) | True | CI01000024_00931895_00936667 |
| CI01000024_00955186_00965837.mRNA | mRNA | upstream | 106255 | 954717 ~ 966070 (-) | True | CI01000024_00955186_00965837 |
| CI01000024_01258292_01261764.mRNA | mRNA | upstream | 408817 | 1257279 ~ 1262033 (-) | True | CI01000024_01258292_01261764 |
| TU137850 | other | downstream | 19143 | 823733 ~ 826851 (-) | True | G121380 |
| TU139935 | other | upstream | 1698998 | 2547460 ~ 2555036 (-) | True | G123233 |
| TU140468 | other | upstream | 3087580 | 3936042 ~ 3937057 (-) | True | G123701 |
| TU142441 | other | upstream | 6508775 | 7357237 ~ 7357595 (-) | False | G125457 |
| TU142437 | other | upstream | 6509243 | 7357705 ~ 7358104 (-) | False | G125457 |
| TU142439 | other | upstream | 6509292 | 7357754 ~ 7358104 (-) | True | G125457 |
