RNA id: TU137896


Basic Information

Item Value
RNA id TU137896
length 718
lncRNA type sense_over
GC content 0.29
exon number 2
gene id G121423
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 874427 ~ 905944 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAATTAAACAATAAACATTTATTAAATTGCTTATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTCTAGTAATTATGTGTCTGATTTGTAGTTTCCAGCCTATTTTGGGTTCATTTTAAGCCAGACATATAGTCATTTTTAAACAATAGTTGAGTTAAATAAAACTACCCAGCATGTTGGACAAACATTTAAAACAACCCATTTTCTGGGTTTGTCCATTTTTAACCCAACTTGGGTTGTTTTTAACCCTGCATTTTTTAGAGTACAGGCTGTTAAAATATTAGTTTTTTAGATTATTTGTTTTTGCGAACCCCATAAAAGCCTTTTTCCAAGTCTACTGATGTGTAGACTTGATTTCCAGCTCTCAGATTGTAACTCTGTAATCAAATGTGTGTAGGCCTGATAATAATTCTGAATCTTATTGTGATTGTTTTTACGATAACTGCATTTATTGTGCACTTTAAATTGCTATTCAAATAAGGGAATTTATGAGAATATCTCTTTTATGTGTCTCTGGTGCATAAAGAGGACAAAAATATATTACTATTGCATAATATAATTCACAAGACAAACATTAATCAATTACTATAATATTGTGGTGGGCTGTGAACACATTGTGAATTGAAAGTGGGTCCAAGAGTAATATATTCAAGTTTAATATTTAAATATTAATTATGTAATTGAACCCATGTGCAGTATTAGTTTGCAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137888 lncRNA downstream 25965 845994 ~ 848462 (-) True G121415
TU137884 lncRNA downstream 32408 838695 ~ 842019 (-) True G121412
TU137871 lncRNA downstream 216680 657431 ~ 657747 (-) True G121399
TU137870 lncRNA downstream 217817 656400 ~ 656610 (-) True G121398
TU137869 lncRNA downstream 218927 655266 ~ 655500 (-) True G121397
TU139514 lncRNA upstream 475484 1381428 ~ 1385325 (-) True G122859
TU139518 lncRNA upstream 538642 1444586 ~ 1452856 (-) False G122860
TU139516 lncRNA upstream 545580 1451524 ~ 1452856 (-) True G122860
TU139582 lncRNA upstream 585907 1491851 ~ 1492211 (-) True G122923
TU139585 lncRNA upstream 595631 1501575 ~ 1505218 (-) True G122926
CI01000024_00825386_00837898.mRNA mRNA downstream 35877 824968 ~ 838550 (-) False CI01000024_00825386_00837898
CI01000024_00766380_00783144.mRNA mRNA downstream 90171 765081 ~ 784256 (-) True CI01000024_00766380_00783144
CI01000024_00758857_00762162.mRNA mRNA downstream 110648 758598 ~ 763779 (-) True CI01000024_00758857_00762162
CI01000024_00747057_00748859.mRNA mRNA downstream 125568 746731 ~ 748859 (-) True CI01000024_00747057_00748859
CI01000024_00697714_00714666.mRNA mRNA downstream 159114 697376 ~ 715313 (-) True CI01000024_00697714_00714666
CI01000024_00913269_00915063.mRNA mRNA upstream 6908 912852 ~ 915565 (-) True CI01000024_00913269_00915063
CI01000024_00931895_00936667.mRNA mRNA upstream 25798 931742 ~ 936831 (-) True CI01000024_00931895_00936667
CI01000024_00955186_00965837.mRNA mRNA upstream 48773 954717 ~ 966070 (-) True CI01000024_00955186_00965837
CI01000024_01258292_01261764.mRNA mRNA upstream 351335 1257279 ~ 1262033 (-) True CI01000024_01258292_01261764
CI01000024_01405425_01412752.mRNA mRNA upstream 499131 1405075 ~ 1412752 (-) True CI01000024_01405425_01412752
TU137850 other downstream 47576 823733 ~ 826851 (-) True G121380
TU139935 other upstream 1641516 2547460 ~ 2555036 (-) True G123233
TU140468 other upstream 3030098 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 6451293 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 6451761 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 6451810 7357754 ~ 7358104 (-) True G125457

Expression Profile