RNA id: TU139516


Basic Information

Item Value
RNA id TU139516
length 1309
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G122860
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 1444586 ~ 1452856 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATGTGTTGGTTTAGGTATCTTTATTTATTATGCTTGGTACCATCCTCCATTTTGTTAGCCTAGTCTGTTTTGCGCCTCTCTCCATTTACTGCACTCAACCTCCTTTAATATTTCCGTCATTCTTTTACTTTATTTGAAACTTAAAGTTTAATCTTTCTTATCTTACATCTTTCCAAATTGACATAGCTACTGGACTTATTAAAATACAGATTTGAAAAGAAAGTGATCTCTCTCTCTTCTCCCACTCATGCAGATGTGCTCATATCACTTTTAGGATGTGTGGAGGCAGAAAAATACAGAATATAATTAACTGTCCTAAAGGTTTTATTCTCAACTTTGTTTGATTCTTTAGTTGCAGCTCCTCGTCCGAGGTTTACATGATGTCCTGCTGGTGCTGCGTAGATTCACTCACCACCTGTAGGGGGCAGTAGAGAGTTTTAAATTCAAAGACAGTCTCTTCCTGTCACCAGGCAATTTGTGAGGAAATCACTACTGGTTTCTATTATTTCAGTACTTTAATCAAATATTTTGAAGTTGTATTGGAGTATTTGACCACAAAACTATCTTATCACCCTTTTGAGGTGATAGGCCTGAGGGAGAATGAACTTGGAAGACTATACTAAGGTGAACTGAAATGTTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCATCAAACCTCTCCGTCACGCGTCTCGATGGTCTTGATCAGGACAGTTTTCTTTGAGTGCATTTCAGATGCTCTCTGTTGGTGCTCTGGACTCGTCTCTGTTGAAAATGATATTAATAAAAACATACACAACCATTTAAAGTTTGGGGTTAGTAAGATGTTTTTGAAACAAGTCTCTTAAGCTCACCGATGCTGCGTTTATTTGATCTAAAATACGGTAAAAAGGTAATGTTATTACAATTTAAAATAGGTTTTTTTAGAAAATAAAATATAAAAATGTAATTTGTTAATCCTGTAATTGCTAGGCTTCAGTGTCACATGATCCTGGCTTCAGAAATCATTGTAATATGCTGATTTTCTGCTCAAGAAACATTCTAGTAACACTTTACAATAAGGTCTCATTAGTTAACATTAGTTAATGCATTAACTAACATTAACTAATGAGTAATACATTTGTTACAGTATTTATTTTTCTTTGTTAACTTTAATAAAAAAGCCTACAACTGTTTGTTCAAGATAGCTCAGGTCCATTAAATAATATTAACAGATACAACATTTGATTTTATTAATGTATTAGTAAGTTATGAAATTAGCACCGACTAAGATTAATAAATGCTCTAGAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139514 lncRNA downstream 66199 1381428 ~ 1385325 (-) True G122859
TU137896 lncRNA downstream 545580 874427 ~ 905944 (-) True G121423
TU137888 lncRNA downstream 603062 845994 ~ 848462 (-) True G121415
TU137884 lncRNA downstream 609505 838695 ~ 842019 (-) True G121412
TU137871 lncRNA downstream 793777 657431 ~ 657747 (-) True G121399
TU139582 lncRNA upstream 38995 1491851 ~ 1492211 (-) True G122923
TU139585 lncRNA upstream 48719 1501575 ~ 1505218 (-) True G122926
TU139643 lncRNA upstream 159980 1612836 ~ 1613067 (-) True G122981
TU139523 lncRNA upstream 205897 1658753 ~ 1788836 (-) True G122864
TU139666 lncRNA upstream 216178 1669034 ~ 1676190 (-) True G123003
CI01000024_01423879_01438170.mRNA mRNA downstream 13354 1423691 ~ 1438170 (-) True CI01000024_01423879_01438170
CI01000024_01405425_01412752.mRNA mRNA downstream 38772 1405075 ~ 1412752 (-) True CI01000024_01405425_01412752
CI01000024_01258292_01261764.mRNA mRNA downstream 189491 1257279 ~ 1262033 (-) True CI01000024_01258292_01261764
CI01000024_00955186_00965837.mRNA mRNA downstream 485454 954717 ~ 966070 (-) True CI01000024_00955186_00965837
CI01000024_00931895_00936667.mRNA mRNA downstream 514693 931742 ~ 936831 (-) True CI01000024_00931895_00936667
CI01000024_01455583_01465466.mRNA mRNA upstream 2539 1455395 ~ 1465577 (-) True CI01000024_01455583_01465466
CI01000024_01517836_01518771.mRNA mRNA upstream 63663 1516519 ~ 1519206 (-) True CI01000024_01517836_01518771
CI01000024_01521726_01530789.mRNA mRNA upstream 68666 1521522 ~ 1530789 (-) True CI01000024_01521726_01530789
CI01000024_01555879_01590626.mRNA mRNA upstream 103023 1555879 ~ 1591305 (-) True CI01000024_01555879_01590626
CI01000024_01630975_01637097.mRNA mRNA upstream 178092 1630948 ~ 1637147 (-) True CI01000024_01630975_01637097
TU137850 other downstream 624673 823733 ~ 826851 (-) True G121380
TU139935 other upstream 1094604 2547460 ~ 2555036 (-) True G123233
TU140468 other upstream 2483186 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 5904381 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 5904849 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 5904898 7357754 ~ 7358104 (-) True G125457

Expression Profile