RNA id: TCONS_00000123


Basic Information

Item Value
RNA id TCONS_00000123
length 784
RNA type processed_transcript
GC content 0.50
exon number 7
gene id XLOC_000062
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5437390 ~ 5504130 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTCAGGAGCTGCTGTCGGCGTCCCGTTGAGTGAAGACGAGGCCAAAGTGTGTATGGTGAATGACATGCTGCAGGATCTCACTCCTCTCGCCACTGCGTACGCCAGAGCCAGAGGATCTGACAGAATGTCCTCTTTTGGAGACTTCATCGCTTTGTCTGATGTCTGTGATGTTCCCACTGCCAAGATCATCTCCAGAGAGGTGTCTGATGGTATTGTTGCTCCTGGTTATGAAGAGGATGCGCTGCGAATTCTGTCCAAAAAGAAGAATGGAAACTATTGTGTTCTTAAGatgGATCCTGAATATGAACCTGATGAGGAAGAGGTGAGGGTGCTGTTTGGTTTACATCTCAAACAGAAGAGGAATGGAGCAGTCATTGATAAAGAGCTCTTCAGCAACATTGTGTCAAAGGGAAAGCTCTCTGAGAGTGCTCTGCGAGACCTCATCGTTGCCTCCATCGCTGTAAAGTACACCCAGTCTAACTCTGTGTGTTATGCTAAGGATGGGCAGGTGATTGGCATCGGAGCTGGGCAGCAGTCTCGTATCCACTGCACCCGGCTGGCAGGAGACAAGGCTGATAACTGGTGGCTCAGGCACCATCCAGGAGTGCTCAGTATGAGGTTCCGCGGCGGAGTGAAGCGTGCAGAGATGGCTAATGCTATTGATCTGTATGTCAGCGGCACAGTTGGAGAGGGACCAGATAAAGAGGTCTGGAAGGGTCTTTTTGAGGAGGTTCCTGAGCCTCTGTCAGAGGTGGAGAAGAAGAATTGGATCAGTTCTCTG

Function

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0003937 IMP cyclohydrolase activity molecular_function
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011212-4 Predicted to enable IMP cyclohydrolase activity and phosphoribosylaminoimidazolecarboxamide formyltransferase activity. Predicted to be involved in 'de novo' IMP biosynthetic process. Predicted to act upstream of or within purine nucleotide biosynthetic process. Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural crest; and yolk. Human ortholog(s) of this gene implicated in purine-pyrimidine metabolic disorder. Orthologous to human ATIC (5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase).

Ensembl:

ensembl_id ENSDART00000141973

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003018 lncRNA upstream 183690 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA upstream 183690 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00002809 lncRNA upstream 467130 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00000113 lncRNA upstream 816808 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00003016 lncRNA upstream 1776682 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00003019 lncRNA downstream 204886 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00003020 lncRNA downstream 292929 5795013 ~ 5799092 (+) False XLOC_000065
TCONS_00003021 lncRNA downstream 292951 5795035 ~ 5799092 (+) True XLOC_000065
TCONS_00000128 lncRNA downstream 659929 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000131 lncRNA downstream 669759 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000118 mRNA upstream 63024 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000119 mRNA upstream 70579 5422576 ~ 5426706 (+) True XLOC_000061
TCONS_00000116 mRNA upstream 78169 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000114 mRNA upstream 219702 5273481 ~ 5277583 (+) False XLOC_000058
TCONS_00000115 mRNA upstream 219708 5275811 ~ 5277577 (+) True XLOC_000058
TCONS_00000124 mRNA downstream 74067 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000125 mRNA downstream 633092 6135176 ~ 6158609 (+) False XLOC_000066
TCONS_00000126 mRNA downstream 633104 6135188 ~ 6158609 (+) True XLOC_000066
TCONS_00000127 mRNA downstream 659846 6161930 ~ 6169817 (+) False XLOC_000067
TCONS_00000129 mRNA downstream 660006 6162090 ~ 6172328 (+) False XLOC_000067
TCONS_00000120 other upstream 10123 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 46841 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 78778 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000111 other upstream 1737251 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000104 other upstream 3055602 2301972 ~ 2441683 (+) False XLOC_000050
TCONS_00000134 other downstream 680258 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000149 other downstream 1285606 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 1561753 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 3652010 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 3652909 9154993 ~ 9155521 (+) False XLOC_000113

Expression Profile

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