RNA id: TCONS_00003019


Basic Information

Item Value
RNA id TCONS_00003019
length 361
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id XLOC_000064
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5706970 ~ 5728684 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCAGTCTTGAAGATCTCGTAGCGCAGGGAGAAACCGGCACCCTGGTGTGCGTAATCAGACACAAACTTGATGTGGATGAAGGGACCGGAGGAGATGATGGCGGGAGGAGCGATGTTACTGCAGTGTTTGCCCAGCAGGTCTGCAGACTCCGAATTCCCATCTCGGATCTCGATGAAGTCATACCTGGAATCCAGGCGTTCCAGCTCAAAGTGGGGGTTGAAGTTGAGCACGATGCGCTGTGAGGGTTCGGGTGCGCTGATCACCCACTGACAGCTCTGATGGGGCGGGTATTCCAGAGGGTATCCTGGAGATGTGATGTAGCCGGCTCCGCTGGCATCCAGGTGGCCTCCACATGTCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003018 lncRNA upstream 393375 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA upstream 393375 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00002809 lncRNA upstream 676815 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00000113 lncRNA upstream 1026493 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00003016 lncRNA upstream 1986367 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00003020 lncRNA downstream 66329 5795013 ~ 5799092 (+) False XLOC_000065
TCONS_00003021 lncRNA downstream 66351 5795035 ~ 5799092 (+) True XLOC_000065
TCONS_00000128 lncRNA downstream 433329 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000131 lncRNA downstream 443159 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000133 lncRNA downstream 444800 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000124 mRNA upstream 119395 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000122 mRNA upstream 202840 5485799 ~ 5504130 (+) False XLOC_000062
TCONS_00000118 mRNA upstream 272709 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000119 mRNA upstream 280264 5422576 ~ 5426706 (+) True XLOC_000061
TCONS_00000116 mRNA upstream 287854 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000125 mRNA downstream 406492 6135176 ~ 6158609 (+) False XLOC_000066
TCONS_00000126 mRNA downstream 406504 6135188 ~ 6158609 (+) True XLOC_000066
TCONS_00000127 mRNA downstream 433246 6161930 ~ 6169817 (+) False XLOC_000067
TCONS_00000129 mRNA downstream 433406 6162090 ~ 6172328 (+) False XLOC_000067
TCONS_00000130 mRNA downstream 442901 6171585 ~ 6182518 (+) False XLOC_000067
TCONS_00000123 other upstream 204886 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 219808 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 256526 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 288463 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000111 other upstream 1946936 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000134 other downstream 453658 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000149 other downstream 1059006 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 1335153 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 3425410 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 3426309 9154993 ~ 9155521 (+) False XLOC_000113

Expression Profile

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