RNA id: TU159563


Basic Information

Item Value
RNA id TU159563
length 232
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G140381
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4132838 ~ 4133069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGTTTAGGCTCCGGGCCCCTCAGACAGGTTATTGGAGAAAGACGAATGCAAACAGTGTACAGTATGCAGTGCATACACTCTCTCTCTCAGTAAGAGGAGGCATTACTTATCTTCAGCGTTCCCAGCATTATCATCTCCTCGATGGCATTATGCCTCATTACACTTGGTCAGGGTCTCAGGGTTGATGGGAACGAGCGATTAAAGGTACAGCTGTGATACGGCTGTCACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157957 lncRNA upstream 267321 3865013 ~ 3865517 (+) True G139023
TU157961 lncRNA upstream 292396 3838205 ~ 3840442 (+) True G139027
TU157950 lncRNA upstream 308403 3824046 ~ 3824435 (+) True G139016
TU157891 lncRNA upstream 344988 3787355 ~ 3787850 (+) True G138958
TU157936 lncRNA upstream 388600 3744009 ~ 3744238 (+) True G139002
TU159566 lncRNA downstream 6870 4139939 ~ 4140428 (+) True G140384
TU159568 lncRNA downstream 13419 4146488 ~ 4146794 (+) True G140386
TU159573 lncRNA downstream 35340 4168409 ~ 4168635 (+) True G140391
TU159574 lncRNA downstream 36994 4170063 ~ 4174661 (+) True G140392
TU159576 lncRNA downstream 41835 4174904 ~ 4175345 (+) True G140394
CI01000027_04054186_04103227.mRNA mRNA upstream 28418 4053038 ~ 4104420 (+) True CI01000027_04054186_04103227
CI01000027_04015806_04037491.mRNA mRNA upstream 94064 4015730 ~ 4038774 (+) True CI01000027_04015806_04037491
CI01000027_04012798_04014351.mRNA mRNA upstream 118487 4012747 ~ 4014351 (+) True CI01000027_04012798_04014351
CI01000027_03998691_04000730.mRNA mRNA upstream 132004 3998168 ~ 4000834 (+) True CI01000027_03998691_04000730
CI01000027_03976548_03994948.mRNA mRNA upstream 137810 3975433 ~ 3995028 (+) True CI01000027_03976548_03994948
CI01000027_04213570_04229519.mRNA mRNA downstream 79429 4212498 ~ 4229677 (+) True CI01000027_04213570_04229519
CI01000027_04350540_04357555.mRNA mRNA downstream 216945 4350014 ~ 4358099 (+) True CI01000027_04350540_04357555
CI01000027_04381523_04393547.mRNA mRNA downstream 248454 4381523 ~ 4394114 (+) True CI01000027_04381523_04393547
CI01000027_04470309_04483532.mRNA mRNA downstream 337076 4470145 ~ 4483559 (+) True CI01000027_04470309_04483532
CI01000027_04485614_04488056.mRNA mRNA downstream 350822 4483891 ~ 4488056 (+) True CI01000027_04485614_04488056
TU157886 other upstream 612773 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 646191 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 2455978 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 2625022 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3133657 995970 ~ 999181 (+) True G138290
TU159628 other downstream 604329 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 604329 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 604329 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 647348 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 647348 4780417 ~ 4784404 (+) False G140440

Expression Profile