RNA id: TCONS_00003020


Basic Information

Item Value
RNA id TCONS_00003020
length 3334
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_000065
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5795013 ~ 5799092 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttaaagtgaaataaaccaaaacaccttttttattaatgaaaaacaCAAATGTACAAATTGTGATTTTAACATAACACGTACCAAAATGTGACAAACAATTTGATGATTCATGATTGAGGAGGCAGTTTACTTACTACATTTAGATATGAGAGTTTTGGTTATAGCGTGTGCAGTGGAAtcacattatttttcatttaatacaacATTAGCTCAGCTTGAAAAATAATAGCAAACCACATAGAAGGAATAAGGtatcaaaaaaagaagaaataaaatatCATCATGCTTGTTATTTGATTTTAGTTATGCAGACCAGCATCTTGattttcataaaaatatatataggcaGAAACCAATTAAAATTTACAAATAACTAAAGtttcattcttaaaaataaatcgACCAGAAATCCTTCTAAAACAGCAGTTAATGAAGTAAAACAAgtataaaaagattaaataaaatccaaaaaaGCAGATTTTCCATAAACATCGACTGCAAAAaagcaatataaaaatattataggaattaaaATCAATTTTCCAATGACAAGACACACATAGGATTGAACACCGACTGAATATCCATACAGTAGCATGTTAAAAAAGTAACAATCAAAATTAAATCCACAAAACGTCATGTATTCTTTAATTTCTTGCTATCTATTTAACTAGAAACCCCTTCGTTCAAGAGTTAAATGTGCAAAAACATGAGTATAAAGTGGGTGCAAggatttattgtttatatattgaaGTTGGCTCTCGCCGGATCCTGTTTTGACTGGCATCACGACTTCTAATTATAACAAACAGATTATTTTATAAACCGAGGACATCAGGAAGTCTTGTTTCCAAAGCAATGATCCAACAATGTTTAACCTTAAAGAAGCGTACTGCACCTAGacggcaaaaaataaaatgaaagaaaaacaaacagcagAAATGTTAAAACCTCGACCTGAGATAAAAGAGGAGCCGCGAGGACAAAAAGTCAAAACAGTTGTTGGAGACTTTGATATGGGATCTGTTGTTTGTGTAACCTCGTCTGATTCATTGTTTTTGGGACGACTTAACAAAAATGTAGCGACTAATAAGAGAGTATTAATTTCAAAACATCAGATTTAGGACACTTTAAGATTGATTTATAGCAAAACGGAGGTGTTTCAGGGAGACAAAGTTACAGAAAAggctaaataaaaacatttagtttaaCAGAAAACGTAAACTGATTGTAAATGTCTTCACATTTCAACATCTTCCCACCATAAGGCACcccaaatataaacaaacacactctcGGAAAATGTTTTTAGGGTAAAATGAcgagaatatttaaaaatctagTCTGTAAATAATGATGAGGAGGAAGAAATGACCCTACTAGCCACGGCTGACCATCATATACACATTTGTGTGAAttaaatacatgcaaaaatgtacatacaaatatacaaacactATAGATCCTTCCTACAGCTGTATGATTCAagcttaaaggggcagttcacacaaaaatgaaaaagagCAGTTTTATTTCAGACGATCCAAGATGTAAGTGATGTTTTATTCTTTAGAAGGGCTTTATTGAAGGTTTTAGCTCATAAAATGGAAGTCCAGGTACTTTAAGAGTCATAAAAAAGACACATACAGGCAACACAAAATTAATCCTTATGATACAATAAGATCAGAAGTTAAACGATCTGTCTGCGCTATAAACTGATCACAATTCACAACATGAGTCATTATGTCATTCTGAGTCAAAGGCactcattttgttttgcctgttttgtttgactctcaaagttgtttgtttttctgctttTCAATAATATTTAGCTCCACCAAAGACCAGTTTAAGAAAAacttaaatttctgtcattatttactcttccTTTACTCGTTGAAAACCTGTACCTTCCATatacttgtttttcctactatagaagtcaaaaGTCACAGGTTTCCGcctttcttcgaaatatcttctcaaagaaactcaaataggtttcaaacaagtcaaGAAAGAGATTACAGATTACAGAACCTTCAGTTTTGGACAAACTAACCCCTTTacttctcttgttttttttttttgttgtttttattttactgtcaaAGTTGTTTGTTTTTCTGACTTTCAGGAATATTTGACTCACCAAAGACCACAGTTTCAGCAAATGTTTACAagtttctagctttcttcaaaatatcttctcaaaGAAAATtgtgtaggtttcaaacaagtgaagaaagagtaaatgatgacagaactttcagttgtggatgaactaacccttttacCTTTTGCATTTCAAGAAAATTATCCAAAGACGACAGACCAAAAAGGGGTTAGTACATCCAAAACTAGAAAATTCGGTCAACATTTACTCTcattcacttgtttaaaacctatttgagATTCTTTGAGAAGATATTTTAGctacaaacctgtaaccattgacttccaaatacttgtttttcctactaaagaaatcaacggttacaggttttcacctttcttcaaaatatgttctttttgtgttcaacagaagaaagaaactcataaatgtttggaaccacttgagggagagttaATAGGGAGTAACTCTTCATTTTTTGTCAAACTACCCCTTTATTGTTCtagttaagaagaaaaaaatgtgcattttgaaAGGTCCGAGGGTGAGAAAATAAACAGCACATTTTCAATTagtgggtgaactgaccctttaaactGGCCCTGCTGTAAAATCAAGTTGACGTCCAGATTTGAGCAATACAGAATGCTAGTTTGGAGTAAATCTTTAACAATCTTTACCTTGTTTACTTTGGAGTAATCCATGGCTGTGTCAAGCTACCATCATTAGCATTTTCTCCTCATACCGTACATCTTCCAAAAACTAGATTGGTCTCATAATTGTACAAAATTACCTTCATTTTTACACAAGCACTTCAGCATTTCAGCACCAACCTTCCTCTTTCTCCTCTAGACGGCTCCGATCATTGGGTTTTTCCGCCGAGGGTCTTGATATTGTTCATCTGTGTATGGGCTGTAGCGGTCAGGACTGGCCGTTCGGTAGTTGCCCTGGTTTAGCGCCTCATATCGCGGTGGCTCTCTGGCTCCTGGATTGGATGACGGAGGGACGTCCTGCCTCATCATCTGTTTTGCTGGGGATGAAGGGTAATGAGCGCCTGGGGTCTCTGTGGGTTTGGGTACAGGCAGACGAGGCGAGCGTGGAGGATTGTCGTAAATGGGGTTCGGGTAAAGGACAGGGTCTCTCTGATTAGACCAGTTCTGGTTTGGATATTCGTCAACAGGCTTCTTCCTGGAGA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003019 lncRNA upstream 66329 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00003018 lncRNA upstream 481418 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA upstream 481418 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00002809 lncRNA upstream 764858 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00000113 lncRNA upstream 1114536 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00000128 lncRNA downstream 362921 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000131 lncRNA downstream 372751 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000133 lncRNA downstream 374392 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000135 lncRNA downstream 383252 6182344 ~ 6185532 (+) True XLOC_000067
TCONS_00000137 lncRNA downstream 390905 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000124 mRNA upstream 207438 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000122 mRNA upstream 290883 5485799 ~ 5504130 (+) False XLOC_000062
TCONS_00000118 mRNA upstream 360752 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000119 mRNA upstream 368307 5422576 ~ 5426706 (+) True XLOC_000061
TCONS_00000116 mRNA upstream 375897 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000125 mRNA downstream 336084 6135176 ~ 6158609 (+) False XLOC_000066
TCONS_00000126 mRNA downstream 336096 6135188 ~ 6158609 (+) True XLOC_000066
TCONS_00000127 mRNA downstream 362838 6161930 ~ 6169817 (+) False XLOC_000067
TCONS_00000129 mRNA downstream 362998 6162090 ~ 6172328 (+) False XLOC_000067
TCONS_00000130 mRNA downstream 372493 6171585 ~ 6182518 (+) False XLOC_000067
TCONS_00000123 other upstream 292929 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 307851 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 344569 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 376506 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000111 other upstream 2034979 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000134 other downstream 383250 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000149 other downstream 988598 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 1264745 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 3355002 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 3355901 9154993 ~ 9155521 (+) False XLOC_000113

Expression Profile

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