RNA id: CI01000034_00821815_00825192.mRNA



Basic Information


Item Value
RNA id CI01000034_00821815_00825192.mRNA
length 1530
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000034_00821815_00825192
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 820595 ~ 825205 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAATACGTTTAAATAAGTGGGAAAAAAATCTGCCAGTGCAGTAAGACAAAATAAACTAATATTTAAGATACAATCTATGAAAGTCTTATATCTAAGTTTCACTTTGAAAAGTAAACTTATCTTATTTTAAGGATTTCTATATATATTTACATGGATAATAAATACAATTTATAAATAAAAATGGTAAAAAAGCTAAAAACCCATTAAGTCTAATATACAGATATTAGGAGTAATAATTTGTTGTGGTATTGTTCAGAATATTTCTATTTCTTTTCTATTTAATTTTTTTTTTTAAATGTAATTAATTCCTGTAATGGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATTCTTGAGAAATCAATCTAATATGCTGATATGATGCTCAAGAAACATTTGGAAAACAGTTCTGCTTAATATTTTTGAGGAAACCATGACTTTTGTCAGAATTCTTTGATGATTTCCTTGAATTTTTAAAAAACATTTACTAGAAATCTTTTGTAAAAGTCTTTACTGTCAATTTCGATCAATTCAATGCATCCTTGCTGAATGAACTTCTAATTTCTTTCTAAAAAAAAAAATCTTACTGGCCCCAAACTTTTAAACTGTACTGTATCTAACCGTTTTAACATACCTTACCTTAACATTCACCTGAGTGTAAAATAAGCCATCTTCAGGTTCACCAAAGGACTGAATATTATACGGCTCACCAGAGGGGCAGGAAGTTTGTGGACAGCCATCATCCTGTGTGGCCTATACTGGCTTTGAGGAGACAGTACAAGTGATTCACAAGGCAGCACATCAGTCGCGCATACAGCAGAGAGCTGGCCAGAGCGAAGTGCCTCATTCTCCTGGTCGTTATCATGAAAGACACAGACCCTTCTCGTATTCCTCAGCCCAGCGTTCCTGGCAACTGTTGCTTTAGAAATGTCCCAAGGTTCCATCCTGCCCTGAATCTCAGCCTGTGGAACAGAGAATGTTGAGACAATGATGCCATAAGGGAAATAACGGAACCTTGAAGAGCAGCCGACCACAAGTATCTTCAATTGCAGTGGAATCAGGTCACGCTTACTCTTCCTGCACACCTACACAATTTTAATGCAACCACTGAAGCGCTTGCCAGTAGGGATGAGTGAATTGAGAGGGTTGGTTGTTAGTTAAGTGTTAGTGAGATGTTATGGCAGCACTGAGAGTTCAAAGATGGCTCAGTCCTGGACGATCAGTGAAGGTTACGGTCAACGATGCTCCCAGGCTCTGACAGAACTGCTGAAACAGCCAGGCGAGGCCGGGGGCGTGGACAGAGGAGGAGGCCACCACCCAATCGGATCCAATGGCATCTCTGGCAGGTCAATGCGCACCAACAACGGTGGTCAGGAAGGACGGATGGACGGAAATGAGAGAAGGAGAAATGCAGTGATGAAGATGGAGTGGGATAATGAACTGCTAGAAAAGTATTTCTCAGATAGATCCATGAAGGTATCCAAGATTTGCTGCTAAAAAATAGACCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192273 lncRNA upstream 3965 804693 ~ 816630 (+) True G169254
TU192217 lncRNA upstream 16751 792175 ~ 799794 (+) True G169200
TU192269 lncRNA upstream 49479 770743 ~ 771116 (+) True G169250
TU192264 lncRNA upstream 56479 763886 ~ 764116 (+) True G169245
TU192220 lncRNA upstream 86502 733755 ~ 734093 (+) True G169203
TU192227 lncRNA downstream 46797 872002 ~ 872400 (+) True G169210
TU192279 lncRNA downstream 49572 874777 ~ 875411 (+) True G169259
TU192280 lncRNA downstream 51605 876810 ~ 877053 (+) True G169260
TU192283 lncRNA downstream 68414 893619 ~ 910887 (+) True G169262
TU192299 lncRNA downstream 86796 912001 ~ 912287 (+) True G169275
CI01000034_00785411_00801907.mRNA mRNA upstream 18536 784545 ~ 802059 (+) False CI01000034_00785411_00801907
CI01000034_00735558_00738466.mRNA mRNA upstream 81120 735487 ~ 739475 (+) True CI01000034_00735558_00738466
CI01000034_00683973_00725610.mRNA mRNA upstream 94690 683973 ~ 725905 (+) False CI01000034_00683973_00725610
CI01000034_00661553_00677752.mRNA mRNA upstream 142118 661553 ~ 678477 (+) False CI01000034_00661553_00677752
CI01000034_00643011_00645310.mRNA mRNA upstream 175285 642901 ~ 645310 (+) False CI01000034_00643011_00645310
CI01000034_00860887_00862727.mRNA mRNA downstream 35682 860887 ~ 862901 (+) True CI01000034_00860887_00862727
CI01000034_00943362_00945523.mRNA mRNA downstream 118157 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_00951238_00955839.mRNA mRNA downstream 125262 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_01124686_01125224.mRNA mRNA downstream 299481 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_01139725_01146104.mRNA mRNA downstream 314520 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
TU192195 other upstream 174185 645451 ~ 646410 (+) True G169178
TU192338 other downstream 144056 969261 ~ 969921 (+) True G169309
TU192400 other downstream 278335 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 325092 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 425014 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 901305 1726510 ~ 1726632 (+) True G169586

Expression Profile