RNA id: TU192430


Basic Information

Item Value
RNA id TU192430
length 211
lncRNA type sense_over
GC content 0.33
exon number 1
gene id CI01000034_01124686_01125224
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1124686 ~ 1126197 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAATATGAATCAGAAATGCAAAACATTTGAGCAATATCACATAAGCAAGTGCTGTTGTTCTGAATATGTGATTTGTCTGTAGGCACGAGAATCACAGATGCCATTCTGATATTCAGACCAACCACATGATTGTGATATTGTGTTTATACAACATTCAATTCGCAAGAAGTTCATATTAAATAACTCCACCAAAGATAACTGTTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192399 lncRNA upstream 6246 1053543 ~ 1119019 (+) False G169357
TU192390 lncRNA upstream 34992 1087419 ~ 1090273 (+) True G169352
TU192389 lncRNA upstream 42003 1082703 ~ 1083262 (+) True G169351
TU192409 lncRNA upstream 44401 1078335 ~ 1080864 (+) True G169365
TU192412 lncRNA upstream 49457 1074720 ~ 1075808 (+) True G169368
TU192445 lncRNA downstream 981 1126456 ~ 1127644 (+) False G169392
TU192444 lncRNA downstream 1012 1126487 ~ 1127644 (+) False G169392
TU192443 lncRNA downstream 1392 1126867 ~ 1127644 (+) False G169392
TU192446 lncRNA downstream 1392 1126867 ~ 1127397 (+) True G169392
TU192440 lncRNA downstream 2274 1127749 ~ 1132032 (+) False G169391
CI01000034_00951238_00955839.mRNA mRNA upstream 169178 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_00943362_00945523.mRNA mRNA upstream 179634 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_00860887_00862727.mRNA mRNA upstream 262364 860887 ~ 862901 (+) True CI01000034_00860887_00862727
CI01000034_00821815_00825192.mRNA mRNA upstream 300060 820595 ~ 825205 (+) True CI01000034_00821815_00825192
CI01000034_00785411_00801907.mRNA mRNA upstream 323206 784545 ~ 802059 (+) False CI01000034_00785411_00801907
CI01000034_01139725_01146104.mRNA mRNA downstream 14250 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01210160_01223724.mRNA mRNA downstream 84685 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
CI01000034_01305634_01306636.mRNA mRNA downstream 180159 1305634 ~ 1306844 (+) True CI01000034_01305634_01306636
CI01000034_01383935_01395565.mRNA mRNA downstream 258116 1383591 ~ 1396448 (+) False CI01000034_01383935_01395565
CI01000034_01632580_01633233.mRNA mRNA downstream 506527 1632002 ~ 1633525 (+) True CI01000034_01632580_01633233
TU192400 other upstream 6246 1103540 ~ 1119019 (+) True G169357
TU192338 other upstream 155344 969261 ~ 969921 (+) True G169309
TU192195 other upstream 478855 645451 ~ 646410 (+) True G169178
TU192449 other downstream 24822 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 124744 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 601035 1726510 ~ 1726632 (+) True G169586
TU192920 other downstream 1192498 2317973 ~ 2337690 (+) True G169806
TU193348 other downstream 2308661 3434136 ~ 3451849 (+) True G170172

Expression Profile