RNA id: TU192529


Basic Information

Item Value
RNA id TU192529
length 230
lncRNA type sense_over
GC content 0.41
exon number 1
gene id CI01000034_01383935_01395565
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1383591 ~ 1396448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACATGAGCCAAAATGGCGGCTTTCATCGTAAGCTCTCGTTTGTTGAGAAGTCTTGGGAACGAAATTAATATTTTTGGCGTCATGTCATTTGCTCTAGTAAGTAACTCGTTTTGAATAGAAGGTTTCACGTGACTGCCACATCCGACAGGACATTCAATGAATAGATAATGAACGACTGCTGTAAACCAATGAATTATGTAACGTCACCTCTTACTAGCGCGACAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192526 lncRNA upstream 14557 1369136 ~ 1369364 (+) True G169461
TU192525 lncRNA upstream 18337 1365205 ~ 1365584 (+) True G169460
TU192523 lncRNA upstream 26681 1356993 ~ 1357240 (+) True G169458
TU192521 lncRNA upstream 30475 1353158 ~ 1353446 (+) True G169456
TU192496 lncRNA upstream 87917 1295591 ~ 1296004 (+) False G169434
TU192383 lncRNA downstream 20663 1404813 ~ 1410866 (+) True G169345
TU192633 lncRNA downstream 207373 1591523 ~ 1591760 (+) True G169561
TU192637 lncRNA downstream 218225 1602375 ~ 1605021 (+) True G169565
TU192642 lncRNA downstream 222616 1606766 ~ 1606974 (+) True G169569
TU192643 lncRNA downstream 223377 1607527 ~ 1607834 (+) True G169570
CI01000034_01305634_01306636.mRNA mRNA upstream 77077 1305634 ~ 1306844 (+) True CI01000034_01305634_01306636
CI01000034_01210160_01223724.mRNA mRNA upstream 160052 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
CI01000034_01139725_01146104.mRNA mRNA upstream 237597 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01124686_01125224.mRNA mRNA upstream 257724 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_00951238_00955839.mRNA mRNA upstream 427834 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_01632580_01633233.mRNA mRNA downstream 247852 1632002 ~ 1633525 (+) True CI01000034_01632580_01633233
CI01000034_01637348_01637904.mRNA mRNA downstream 252461 1636611 ~ 1638009 (+) True CI01000034_01637348_01637904
CI01000034_01657515_01658817.mRNA mRNA downstream 273060 1657210 ~ 1659106 (+) True CI01000034_01657515_01658817
CI01000034_01729413_01730790.mRNA mRNA downstream 345263 1729413 ~ 1731179 (+) False CI01000034_01729413_01730790
CI01000034_01764505_01767882.mRNA mRNA downstream 380355 1764505 ~ 1767922 (+) True CI01000034_01764505_01767882
TU192378 other upstream 73043 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 190361 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 264902 1103540 ~ 1119019 (+) True G169357
TU192338 other upstream 414000 969261 ~ 969921 (+) True G169309
TU192195 other upstream 737511 645451 ~ 646410 (+) True G169178
TU192663 other downstream 342360 1726510 ~ 1726632 (+) True G169586
TU192920 other downstream 933823 2317973 ~ 2337690 (+) True G169806
TU193348 other downstream 2049986 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 2740950 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 2810488 4194638 ~ 4194993 (+) True G170522

Expression Profile