RNA id: CI01000034_04525428_04534655.mRNA


Basic Information

Item Value
RNA id CI01000034_04525428_04534655.mRNA
length 2017
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000034_04525428_04534655
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4525001 ~ 4535684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTAAAAAGTGAGTCCAGCAAGATAAATCCACCTCCTGACTCCTGAGCTTTAGCACAGAGAGAAACTTCTATTAGGGCTACAGCATCTGAGCTATTGCTAGTAAAACCCAAACTAGATGCTGTACACTGAAGTATACGGTTATAAACAAGATTATAAAGTAAAATTTGTAACGATTGCCCAAAGTATTGCATTCTCAGAGTATGGAAATTGCTACCAATATTATGTCTGGACTTCAAAGAATGAGAGTAGAAATGGCTCACAATCATGGAAGCCATCTGTTTAAGAAGAGTTATTTAAAAAGAGAGAGAGAGAAGATGGTTTAGAGGAAGGGAGACGGGAGGGAGGAGGGTTATAAAGAGAGAGAGAGAGAGTTCGAATAAATCCTTACCACATAATGATTACGGCTCACAAGTCCTGCCTCTGAAATGGAGTGCAGAAGGAGCCGGGATTACAACTACAGTAATCTGAGAACCACAACTGCACTCTACAGCCACAGACGAGCACATCAACTCCAACAAAACATCAGGGTTTTTGGAGTAATCCGTGGTGTCTTTTACTGGAATGAGGACTACACTGGAAAAATGAGGCGGAAACAAGTTAACAAGGGCTGTGAAACTGTGTCATCTCAAGCTGCTGCACCCACAGGTTGGATGCTTGTTGAAATTGTGAAGTTTTCTTTTACAAGTGTGGCCAAAACACACAAACCTCTGTGTCCCTTCCCTGTGCAAGAGGTCACTGAAAGTTACTACGTTTTCAACACATGGCAGACTGAGGGGCGGATGGGTGTCAGTCCACAAGCCAGATTACAAAACAAAGTGGTATGTTTATACGCGGATTATTCTGTGCGAGTGGGTTTGTGGCAGTGCGAATTGGAGAAAGCGAGTGTTGTGCGTGAGCCGAGGGAAGCAGATACTCTGCTGTTAAAGCAGTCTGATGACATCTGGATGAGGGGAGATTCTGTGGCGGATGCCACAACCTCAGCTTAAGGCCGTCTTATCATGATCCCGCACTCCAAATAGCCCCCACACACACATATATGAACCTATGCACACAAAAAAACCCCAGTATGCTTTTGCTGCTCACCATAACGCAACATGCACTGGAGTTTAGCGTTAACAGTGGTGCCATATAAGATATATGGAGTCTACGACTACATGTGTCAAGTAAAATGGATCGTTGCCCCTGCAACACATTTTCAATTCCAGCGTAATCTGCTGCCTTTCAGATGTTATTACAGTTAAACAGCCTGGAAAAAATCCTCACTCTCACGCAAAAACAGACCAAAAAAAGAAAAAGAAAATCGGCTTGTTGTGCTAAGAAGGTTGACAGTGAGTGAGAAATGTGTTTGGGGGAAAGGATCTTGATGGATGGACTCTTTGCATCCTTCTAGGACTCTGGGTTAATAGAGATCTTTACAGAATGTCCTAGGCGCTGGTCCAGGACCAGATCTGTATCCTTTCTGATGGTCAAGATTAATGCTGATGAGAGAGAAGCAGTGTGAAGAATGTTGTAACCTTTGTTTCTTATATTTGGCCAAAATTTATATGATATATAATGAATGTATAAGGGGCAAGTGTATTTTTGATGCTGAAAACGGTCACTTTTTTTTTTCTTAGCTTATTTTTAGCACTTTCTTGCAGTTTTCGAAATGTGTAGTGTGTACAACAAAGCACCTGACCTTCTATTGGAAGTGTGATGAATCATACCCCCCCCCCTTCTTTTAATTACCCTTTTGCATTTTGCTGTTCATTAAAAGGTGTGACAAATTAATTTTTAGAAGTACAAATACTCCATGTGGCTTCTCAATGAAAAGCAGGTCATAAAAAATGCATGCATAATAATTAGAAAATGTTGTTTTGGTGGAGTAAGGCATGTCACACTGCAGGACACTTATGTGATTGTCATGTCACAGAACCCATGTATGAACTGATGATTCGTTATTTATTAGTTGATGTCATTAGTGTAATTAAGAGGAAAATAGATAGCCTCCATTTTTGTTAGTCTAAAATGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193354 lncRNA upstream 78092 4443628 ~ 4446909 (+) True G170178
TU193381 lncRNA upstream 108150 4410355 ~ 4416851 (+) True G170205
TU193408 lncRNA upstream 115742 4405633 ~ 4409259 (+) True G170232
TU193769 lncRNA upstream 161879 4362728 ~ 4363122 (+) True G170563
TU193768 lncRNA upstream 163691 4360819 ~ 4361310 (+) True G170562
TU193399 lncRNA downstream 14811 4550495 ~ 4562847 (+) True G170223
TU193787 lncRNA downstream 86155 4621839 ~ 4622328 (+) True G170579
TU193834 lncRNA downstream 171979 4707663 ~ 4707873 (+) True G170620
TU193870 lncRNA downstream 236622 4772306 ~ 4773521 (+) True G170644
TU193871 lncRNA downstream 237976 4773660 ~ 4777068 (+) True G170645
CI01000034_04473631_04513799.mRNA mRNA upstream 10456 4473631 ~ 4514545 (+) True CI01000034_04473631_04513799
CI01000034_04364393_04367046.mRNA mRNA upstream 157797 4364314 ~ 4367204 (+) True CI01000034_04364393_04367046
CI01000034_04282490_04284734.mRNA mRNA upstream 239465 4282490 ~ 4285536 (+) True CI01000034_04282490_04284734
CI01000034_04260286_04274615.mRNA mRNA upstream 249599 4260286 ~ 4275402 (+) True CI01000034_04260286_04274615
CI01000034_04251494_04257594.mRNA mRNA upstream 267144 4251494 ~ 4257857 (+) True CI01000034_04251494_04257594
CI01000034_04548660_04597274.mRNA mRNA downstream 12903 4548587 ~ 4597396 (+) True CI01000034_04548660_04597274
CI01000034_04641898_04648112.mRNA mRNA downstream 105342 4641026 ~ 4648150 (+) True CI01000034_04641898_04648112
CI01000034_04728112_04738169.mRNA mRNA downstream 191165 4726849 ~ 4738327 (+) True CI01000034_04728112_04738169
CI01000034_04746797_04771378.mRNA mRNA downstream 211113 4746797 ~ 4771931 (+) True CI01000034_04746797_04771378
CI01000034_04811319_04813561.mRNA mRNA downstream 275635 4811319 ~ 4814665 (+) True CI01000034_04811319_04813561
TU193723 other upstream 326800 4194638 ~ 4194993 (+) True G170522
TU193699 other upstream 398190 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193348 other upstream 1073152 3434136 ~ 3451849 (+) True G170172
TU192920 other upstream 2187311 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 2793824 1726510 ~ 1726632 (+) True G169586

Expression Profile