RNA id: TU192232


Basic Information

Item Value
RNA id TU192232
length 325
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G169215
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 612436 ~ 613239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGGTAAGATGAAATTTCAAAAGTCATGACAGACTGGCTGGCTTGTAGAAGACTAGGAACAGACTGATTCGGCACAGTAATGCCTTTCAGTGGCACTTTCAGAGGTTTAGGATGAAGAGAACCAGCATTTGAGGATGTACCTAACCCATTGGTTTGGGTGTTTATTATTTCTATGTTTTCAGATTCCGAGAGTTGCCACAGACGTTCAACAACAAGTCCAGCTACCATTCCATCCAAGGCACTATGCTCAAACAACATGCCTGCTTGGCCATCTTTAAAAACCACCAAGTTCACCACCTTATCATAGTATCTCAAACATCTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192238 lncRNA upstream 22237 589854 ~ 590199 (+) True G169221
TU192237 lncRNA upstream 24292 587903 ~ 588144 (+) True G169220
TU192189 lncRNA upstream 53195 557107 ~ 559241 (+) True G169174
TU192188 lncRNA upstream 55477 556728 ~ 556959 (+) True G169173
TU192184 lncRNA upstream 56680 555260 ~ 555756 (+) True G169172
TU192202 lncRNA downstream 1792 647858 ~ 648777 (+) True G169185
TU192198 lncRNA downstream 13311 626550 ~ 630549 (+) True G169181
TU192250 lncRNA downstream 64830 678069 ~ 679148 (+) False CI01000034_00661553_00677752
TU192252 lncRNA downstream 64830 678069 ~ 678542 (+) True CI01000034_00661553_00677752
TU192218 lncRNA downstream 102916 716155 ~ 718431 (+) True CI01000034_00683973_00725610
CI01000034_00545816_00547683.mRNA mRNA upstream 63922 545816 ~ 548514 (+) True CI01000034_00545816_00547683
CI01000034_00520790_00525323.mRNA mRNA upstream 86863 520672 ~ 525573 (+) True CI01000034_00520790_00525323
CI01000034_00486238_00516732.mRNA mRNA upstream 94912 486238 ~ 517524 (+) True CI01000034_00486238_00516732
CI01000034_00455762_00459788.mRNA mRNA upstream 152509 455145 ~ 459927 (+) True CI01000034_00455762_00459788
CI01000034_00422322_00453621.mRNA mRNA upstream 158792 421475 ~ 453644 (+) True CI01000034_00422322_00453621
CI01000034_00615867_00624387.mRNA mRNA downstream 1719 614958 ~ 625318 (+) False CI01000034_00615867_00624387
CI01000034_00637189_00642362.mRNA mRNA downstream 23731 636970 ~ 642439 (+) True CI01000034_00637189_00642362
CI01000034_00643011_00645310.mRNA mRNA downstream 29662 642901 ~ 645310 (+) False CI01000034_00643011_00645310
CI01000034_00661553_00677752.mRNA mRNA downstream 48314 661553 ~ 678477 (+) False CI01000034_00661553_00677752
CI01000034_00683973_00725610.mRNA mRNA downstream 70734 683973 ~ 725905 (+) False CI01000034_00683973_00725610
TU192195 other downstream 29758 645451 ~ 646410 (+) True G169178
TU192338 other downstream 356022 969261 ~ 969921 (+) True G169309
TU192400 other downstream 490301 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 537058 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 636980 1250219 ~ 1310878 (+) True G169340

Expression Profile