RNA id: TU192222


Basic Information

Item Value
RNA id TU192222
length 834
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G169205
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 732615 ~ 733448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATATTGCCTAATAAAGGTACTAGTTTATTCAACTGGAAAACTATGATATATCTAAATATTTACTAATAACTAAAGAATAAGTATAACTACGAACCCTAACTAGTAACTAATTCAACTGGAAGAGGTACTAGCAACAATCGGTATACATACTAAATAGTTGACGTTTGAAACACAGAGAATGCAATAGCAAAAAATTTGCATTTTATTACCAATAACAATAGAATAGTTATTTGACACTACTGGAATAAGGAAATTAGTAGCCTACTAGTATTTTACATTTATGCATTTTGTAGATCAGCTTACATTTGATATAATTTTAACTAGTACTCAAAAAACAAGTAACATGATATAGTTATAAAAATAAAACAAAAATTCATCACACCCTCATGTCATTCCAAACCCATAAGATTTTCGTTAATCTTCGAAACACAAATGAAGATATTTTAAATGAAATCTGAGAGATTTCTGTCCCTCCATTGACAGTCCATGCAGCTACCACTTTGTTGTTTCCAAAAGTTCATAAAGAGATCGTAAAACTAATCCATATGAATCGTCCAAATTTTCTGAAGAAACTTGATCACTTCGATGAACAGGTTGAATTTAGGCTTTTATTCACATTGATCAATAAACATAAACAGTAGCTCAACCGTACTTGCTTGACGTGTGAGGACAAACCTCATTGGTTCTTGTGCGTAACACACAAGAATGAACCTCATTGGTTCTCCCACATCAAGCAAGCATGCTTAGCTTCTGTTTACCATTTCTGATGTGTGCATTGATGAATGTTTATATGTGAATAAAAGCCTAAATTCAATCTGTTTCTCATATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192218 lncRNA upstream 14184 716155 ~ 718431 (+) True CI01000034_00683973_00725610
TU192250 lncRNA upstream 53467 678069 ~ 679148 (+) False CI01000034_00661553_00677752
TU192252 lncRNA upstream 54073 678069 ~ 678542 (+) True CI01000034_00661553_00677752
TU192202 lncRNA upstream 83838 647858 ~ 648777 (+) True G169185
TU192198 lncRNA upstream 102066 626550 ~ 630549 (+) True G169181
TU192220 lncRNA downstream 307 733755 ~ 734093 (+) True G169203
TU192264 lncRNA downstream 30438 763886 ~ 764116 (+) True G169245
TU192269 lncRNA downstream 37295 770743 ~ 771116 (+) True G169250
TU192217 lncRNA downstream 58727 792175 ~ 799794 (+) True G169200
TU192273 lncRNA downstream 71245 804693 ~ 816630 (+) True G169254
CI01000034_00683973_00725610.mRNA mRNA upstream 6710 683973 ~ 725905 (+) False CI01000034_00683973_00725610
CI01000034_00661553_00677752.mRNA mRNA upstream 54138 661553 ~ 678477 (+) False CI01000034_00661553_00677752
CI01000034_00643011_00645310.mRNA mRNA upstream 87305 642901 ~ 645310 (+) False CI01000034_00643011_00645310
CI01000034_00637189_00642362.mRNA mRNA upstream 90176 636970 ~ 642439 (+) True CI01000034_00637189_00642362
CI01000034_00615867_00624387.mRNA mRNA upstream 107297 614958 ~ 625318 (+) False CI01000034_00615867_00624387
CI01000034_00735558_00738466.mRNA mRNA downstream 2039 735487 ~ 739475 (+) True CI01000034_00735558_00738466
CI01000034_00785411_00801907.mRNA mRNA downstream 51097 784545 ~ 802059 (+) False CI01000034_00785411_00801907
CI01000034_00821815_00825192.mRNA mRNA downstream 87147 820595 ~ 825205 (+) True CI01000034_00821815_00825192
CI01000034_00860887_00862727.mRNA mRNA downstream 127439 860887 ~ 862901 (+) True CI01000034_00860887_00862727
CI01000034_00943362_00945523.mRNA mRNA downstream 209914 943362 ~ 945631 (+) True CI01000034_00943362_00945523
TU192195 other upstream 86205 645451 ~ 646410 (+) True G169178
TU192338 other downstream 235813 969261 ~ 969921 (+) True G169309
TU192400 other downstream 370092 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 416849 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 516771 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 993062 1726510 ~ 1726632 (+) True G169586

Expression Profile