RNA id: TU192446


Basic Information

Item Value
RNA id TU192446
length 531
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G169392
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1126456 ~ 1127644 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACACACACACACACACACACACACACACACACACACACACACACAAAATCACTACTGTAGCCAGAAAAATGTCTACACAGAATGGTTGAGAAGTTACACAGTGCAGCAGTGTGGAGCTGATCTCCTGAACACAGTTTAAGGGCTTGTTCTCAAACAGTCAGGGCATTAATGATTTGCACATGTTCTGTGTGCTTAACACTGCTAACTCAGCTAACGATACAGACCTGGTTGCACAAGACAGCAAATGTAAATAAGAACTTGTAAATAAGAATGCTAGCTGGAGAAAGTTGAGCCTGAACATTTAAAGTTCAAATCTTATGCAGCTAGGCCACTTCTAGCCGATTCTAAGATATCTGGTTGACATAGCTTGAAAGCTCAGGAATTACAATGAGAAACTTTCCTGGGAAATCCGGGAAAGGAAGTCCAATCAATTAGAAAAGAAGTGAGAACAGCCTGAAGGACTGTACTGAGTTTGGTAGATGTAGCTTGAACGCCCTATTAGGAGTTAACCTAAATGCATACAGGATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192430 lncRNA upstream 1392 1125265 ~ 1125475 (+) True CI01000034_01124686_01125224
TU192390 lncRNA upstream 36594 1087419 ~ 1090273 (+) True G169352
TU192389 lncRNA upstream 43605 1082703 ~ 1083262 (+) True G169351
TU192409 lncRNA upstream 46003 1078335 ~ 1080864 (+) True G169365
TU192412 lncRNA upstream 51059 1074720 ~ 1075808 (+) True G169368
TU192440 lncRNA downstream 352 1127749 ~ 1132032 (+) False G169391
TU192441 lncRNA downstream 2562 1129959 ~ 1132468 (+) True G169391
TU192478 lncRNA downstream 105490 1232887 ~ 1233089 (+) True G169417
TU192483 lncRNA downstream 120750 1248147 ~ 1248372 (+) True G169422
TU192498 lncRNA downstream 166772 1294169 ~ 1302067 (+) False G169435
CI01000034_01124686_01125224.mRNA mRNA upstream 670 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_00951238_00955839.mRNA mRNA upstream 170780 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_00943362_00945523.mRNA mRNA upstream 181236 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_00860887_00862727.mRNA mRNA upstream 263966 860887 ~ 862901 (+) True CI01000034_00860887_00862727
CI01000034_00821815_00825192.mRNA mRNA upstream 301662 820595 ~ 825205 (+) True CI01000034_00821815_00825192
CI01000034_01139725_01146104.mRNA mRNA downstream 12328 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01210160_01223724.mRNA mRNA downstream 82763 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
CI01000034_01305634_01306636.mRNA mRNA downstream 178237 1305634 ~ 1306844 (+) True CI01000034_01305634_01306636
CI01000034_01383935_01395565.mRNA mRNA downstream 256194 1383591 ~ 1396448 (+) False CI01000034_01383935_01395565
CI01000034_01632580_01633233.mRNA mRNA downstream 504605 1632002 ~ 1633525 (+) True CI01000034_01632580_01633233
TU192400 other upstream 7848 1103540 ~ 1119019 (+) True G169357
TU192338 other upstream 156946 969261 ~ 969921 (+) True G169309
TU192195 other upstream 480457 645451 ~ 646410 (+) True G169178
TU192449 other downstream 22900 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 122822 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 599113 1726510 ~ 1726632 (+) True G169586
TU192920 other downstream 1190576 2317973 ~ 2337690 (+) True G169806
TU193348 other downstream 2306739 3434136 ~ 3451849 (+) True G170172

Expression Profile