RNA id: TU192478


Basic Information

Item Value
RNA id TU192478
length 203
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G169417
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1232887 ~ 1233089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAAATTGGTATTCAATTTGGTATGCTGCACTGAATCAACAGACACCAGTTTAATGATTTTTGACCAAATCAGAAGTTATAAGCAAAAAAAGCTATTTTTCATATCTCCTGAACAGTAGGTGGCACTATGCCGAAATGCTGCAAGTAGCCTCAGGTCATGGTTCTAATGACATGTACCAAGTTTCGTCTTAATACACTAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192441 lncRNA upstream 100419 1129959 ~ 1132468 (+) True G169391
TU192440 lncRNA upstream 100855 1127749 ~ 1132032 (+) False G169391
TU192445 lncRNA upstream 105243 1126456 ~ 1127644 (+) False G169392
TU192444 lncRNA upstream 105243 1126487 ~ 1127644 (+) False G169392
TU192443 lncRNA upstream 105243 1126867 ~ 1127644 (+) False G169392
TU192483 lncRNA downstream 15058 1248147 ~ 1248372 (+) True G169422
TU192498 lncRNA downstream 61080 1294169 ~ 1302067 (+) False G169435
TU192499 lncRNA downstream 61080 1294169 ~ 1294624 (+) True G169435
TU192496 lncRNA downstream 62502 1295591 ~ 1296004 (+) False G169434
TU192497 lncRNA downstream 62611 1295700 ~ 1296004 (+) True G169434
CI01000034_01210160_01223724.mRNA mRNA upstream 9018 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
CI01000034_01139725_01146104.mRNA mRNA upstream 86563 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01124686_01125224.mRNA mRNA upstream 106690 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_00951238_00955839.mRNA mRNA upstream 276800 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_00943362_00945523.mRNA mRNA upstream 287256 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_01305634_01306636.mRNA mRNA downstream 72545 1305634 ~ 1306844 (+) True CI01000034_01305634_01306636
CI01000034_01383935_01395565.mRNA mRNA downstream 150502 1383591 ~ 1396448 (+) False CI01000034_01383935_01395565
CI01000034_01632580_01633233.mRNA mRNA downstream 398913 1632002 ~ 1633525 (+) True CI01000034_01632580_01633233
CI01000034_01637348_01637904.mRNA mRNA downstream 403522 1636611 ~ 1638009 (+) True CI01000034_01637348_01637904
CI01000034_01657515_01658817.mRNA mRNA downstream 424121 1657210 ~ 1659106 (+) True CI01000034_01657515_01658817
TU192449 other upstream 39327 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 113868 1103540 ~ 1119019 (+) True G169357
TU192338 other upstream 262966 969261 ~ 969921 (+) True G169309
TU192195 other upstream 586477 645451 ~ 646410 (+) True G169178
TU192378 other downstream 17130 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 493421 1726510 ~ 1726632 (+) True G169586
TU192920 other downstream 1084884 2317973 ~ 2337690 (+) True G169806
TU193348 other downstream 2201047 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 2892011 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780

Expression Profile