RNA id: TU192496


Basic Information

Item Value
RNA id TU192496
length 228
lncRNA type antisense_over
GC content 0.56
exon number 3
gene id G169434
representative False

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1295591 ~ 1296004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGATGATGTCAGCTGTGAGGAAGGACTCGGGCAACGAGATCCTCCTGTTAGCGCTGTCGTCTAGGGTTCTTTCCAGCCACTGCACTGATGCAGTCTGCAGAGGGTCTGACACCAGCGCCATCAGGTGGCGAGCAAGACTACAGCAGCGCTCTGCACGCATGGGGTTTCTCTTGTACGGCATGGCACTGGAACCAATCTGCTCTTTCTCAAAAGGCTCCTCGATCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192499 lncRNA upstream 967 1294169 ~ 1294624 (+) True G169435
TU192483 lncRNA upstream 47219 1248147 ~ 1248372 (+) True G169422
TU192478 lncRNA upstream 62502 1232887 ~ 1233089 (+) True G169417
TU192441 lncRNA upstream 163123 1129959 ~ 1132468 (+) True G169391
TU192440 lncRNA upstream 163559 1127749 ~ 1132032 (+) False G169391
TU192521 lncRNA downstream 57154 1353158 ~ 1353446 (+) True G169456
TU192523 lncRNA downstream 60989 1356993 ~ 1357240 (+) True G169458
TU192525 lncRNA downstream 69201 1365205 ~ 1365584 (+) True G169460
TU192526 lncRNA downstream 73132 1369136 ~ 1369364 (+) True G169461
TU192529 lncRNA downstream 87917 1383921 ~ 1384150 (+) True CI01000034_01383935_01395565
CI01000034_01210160_01223724.mRNA mRNA upstream 71722 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
CI01000034_01139725_01146104.mRNA mRNA upstream 149267 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01124686_01125224.mRNA mRNA upstream 169394 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_00951238_00955839.mRNA mRNA upstream 339504 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_00943362_00945523.mRNA mRNA upstream 349960 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_01305634_01306636.mRNA mRNA downstream 9630 1305634 ~ 1306844 (+) True CI01000034_01305634_01306636
CI01000034_01383935_01395565.mRNA mRNA downstream 87587 1383591 ~ 1396448 (+) False CI01000034_01383935_01395565
CI01000034_01632580_01633233.mRNA mRNA downstream 335998 1632002 ~ 1633525 (+) True CI01000034_01632580_01633233
CI01000034_01637348_01637904.mRNA mRNA downstream 340607 1636611 ~ 1638009 (+) True CI01000034_01637348_01637904
CI01000034_01657515_01658817.mRNA mRNA downstream 361206 1657210 ~ 1659106 (+) True CI01000034_01657515_01658817
TU192449 other upstream 102031 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 176572 1103540 ~ 1119019 (+) True G169357
TU192338 other upstream 325670 969261 ~ 969921 (+) True G169309
TU192195 other upstream 649181 645451 ~ 646410 (+) True G169178
TU192663 other downstream 430506 1726510 ~ 1726632 (+) True G169586
TU192920 other downstream 1021969 2317973 ~ 2337690 (+) True G169806
TU193348 other downstream 2138132 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 2829096 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 2898634 4194638 ~ 4194993 (+) True G170522

Expression Profile