Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU192551 |
| length | 1150 |
| lncRNA type | antisense_over |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G169482 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 1676497 ~ 1677646 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU192651 | lncRNA | upstream | 57122 | 1619099 ~ 1619375 (+) | True | G169578 |
| TU192650 | lncRNA | upstream | 58459 | 1617759 ~ 1618038 (+) | True | G169577 |
| TU192643 | lncRNA | upstream | 68663 | 1607527 ~ 1607834 (+) | True | G169570 |
| TU192642 | lncRNA | upstream | 69523 | 1606766 ~ 1606974 (+) | True | G169569 |
| TU192637 | lncRNA | upstream | 71476 | 1602375 ~ 1605021 (+) | True | G169565 |
| TU192545 | lncRNA | downstream | 13384 | 1691030 ~ 1692070 (+) | True | G169477 |
| TU192691 | lncRNA | downstream | 149937 | 1827583 ~ 1830891 (+) | True | G169611 |
| TU192697 | lncRNA | downstream | 182931 | 1860577 ~ 1861083 (+) | True | CI01000034_01858418_01860499 |
| TU192700 | lncRNA | downstream | 216834 | 1894480 ~ 1910064 (+) | True | G169620 |
| TU192686 | lncRNA | downstream | 272784 | 1950430 ~ 1952366 (+) | True | G169606 |
| CI01000034_01657515_01658817.mRNA | mRNA | upstream | 17391 | 1657210 ~ 1659106 (+) | True | CI01000034_01657515_01658817 |
| CI01000034_01637348_01637904.mRNA | mRNA | upstream | 38488 | 1636611 ~ 1638009 (+) | True | CI01000034_01637348_01637904 |
| CI01000034_01632580_01633233.mRNA | mRNA | upstream | 42972 | 1632002 ~ 1633525 (+) | True | CI01000034_01632580_01633233 |
| CI01000034_01383935_01395565.mRNA | mRNA | upstream | 280049 | 1383591 ~ 1396448 (+) | False | CI01000034_01383935_01395565 |
| CI01000034_01305634_01306636.mRNA | mRNA | upstream | 369653 | 1305634 ~ 1306844 (+) | True | CI01000034_01305634_01306636 |
| CI01000034_01729413_01730790.mRNA | mRNA | downstream | 51767 | 1729413 ~ 1731179 (+) | False | CI01000034_01729413_01730790 |
| CI01000034_01764505_01767882.mRNA | mRNA | downstream | 86859 | 1764505 ~ 1767922 (+) | True | CI01000034_01764505_01767882 |
| CI01000034_01769963_01776287.mRNA | mRNA | downstream | 90329 | 1767975 ~ 1776720 (+) | True | CI01000034_01769963_01776287 |
| CI01000034_01811735_01836960.mRNA | mRNA | downstream | 133821 | 1811467 ~ 1836960 (+) | True | CI01000034_01811735_01836960 |
| CI01000034_01858418_01860499.mRNA | mRNA | downstream | 180772 | 1858418 ~ 1861085 (+) | False | CI01000034_01858418_01860499 |
| TU192378 | other | upstream | 365619 | 1250219 ~ 1310878 (+) | True | G169340 |
| TU192449 | other | upstream | 482937 | 1150297 ~ 1193560 (+) | True | G169394 |
| TU192400 | other | upstream | 557478 | 1103540 ~ 1119019 (+) | True | G169357 |
| TU192338 | other | upstream | 706576 | 969261 ~ 969921 (+) | True | G169309 |
| TU192195 | other | upstream | 1030087 | 645451 ~ 646410 (+) | True | G169178 |
| TU192663 | other | downstream | 48864 | 1726510 ~ 1726632 (+) | True | G169586 |
| TU192920 | other | downstream | 640327 | 2317973 ~ 2337690 (+) | True | G169806 |
| TU193348 | other | downstream | 1756490 | 3434136 ~ 3451849 (+) | True | G170172 |
| TU193699 | other | downstream | 2447454 | 4125100 ~ 4126811 (+) | True | CI01000034_04125435_04125780 |
| TU193723 | other | downstream | 2516992 | 4194638 ~ 4194993 (+) | True | G170522 |
