RNA id: TU193760


Basic Information

Item Value
RNA id TU193760
length 241
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G170554
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4349638 ~ 4349878 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGGCAGTTTCTAGGACATTGCTATGAGGTAGCTATTGTGTTCCAAGTGATTTCTAGCGTATTACTTTGCAATTTATACACTGTTTTGGGTGGTTGCTAGGGTGTTATTATGTAGATGATAAGATGTTTGAGTAATTTCTAGCATGCTGCTGTGCAGTTGATATAGTGTTTTGGGTGGTTGCTAAGGCATTGCTATGGTGTACTACATGATTTCTAGCATGTTTGCTATGCCTAAAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193751 lncRNA upstream 14432 4334977 ~ 4335206 (+) True G170545
TU193741 lncRNA upstream 29650 4318600 ~ 4319988 (+) True G170537
TU193731 lncRNA upstream 128142 4221283 ~ 4221496 (+) True G170528
TU193416 lncRNA upstream 129035 4218753 ~ 4220603 (+) True G170240
TU193730 lncRNA upstream 131482 4217889 ~ 4218156 (+) True G170527
TU193765 lncRNA downstream 6024 4355902 ~ 4356118 (+) True G170559
TU193768 lncRNA downstream 10941 4360819 ~ 4361310 (+) True G170562
TU193769 lncRNA downstream 12850 4362728 ~ 4363122 (+) True G170563
TU193408 lncRNA downstream 55755 4405633 ~ 4409259 (+) True G170232
TU193381 lncRNA downstream 60477 4410355 ~ 4416851 (+) True G170205
CI01000034_04282490_04284734.mRNA mRNA upstream 64102 4282490 ~ 4285536 (+) True CI01000034_04282490_04284734
CI01000034_04260286_04274615.mRNA mRNA upstream 74236 4260286 ~ 4275402 (+) True CI01000034_04260286_04274615
CI01000034_04251494_04257594.mRNA mRNA upstream 91781 4251494 ~ 4257857 (+) True CI01000034_04251494_04257594
CI01000034_04244137_04250139.mRNA mRNA upstream 99045 4244137 ~ 4250593 (+) True CI01000034_04244137_04250139
CI01000034_04229970_04238150.mRNA mRNA upstream 111171 4229970 ~ 4238467 (+) True CI01000034_04229970_04238150
CI01000034_04364393_04367046.mRNA mRNA downstream 14436 4364314 ~ 4367204 (+) True CI01000034_04364393_04367046
CI01000034_04473631_04513799.mRNA mRNA downstream 123753 4473631 ~ 4514545 (+) True CI01000034_04473631_04513799
CI01000034_04525428_04534655.mRNA mRNA downstream 175123 4525001 ~ 4535684 (+) True CI01000034_04525428_04534655
CI01000034_04548660_04597274.mRNA mRNA downstream 198709 4548587 ~ 4597396 (+) True CI01000034_04548660_04597274
CI01000034_04641898_04648112.mRNA mRNA downstream 291148 4641026 ~ 4648150 (+) True CI01000034_04641898_04648112
TU193723 other upstream 151437 4194638 ~ 4194993 (+) True G170522
TU193699 other upstream 222827 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193348 other upstream 897789 3434136 ~ 3451849 (+) True G170172
TU192920 other upstream 2011948 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 2618461 1726510 ~ 1726632 (+) True G169586

Expression Profile