RNA id: TU193768


Basic Information

Item Value
RNA id TU193768
length 492
lncRNA type intronic
GC content 0.43
exon number 1
gene id G170562
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4360819 ~ 4361310 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCACAATTGTGAGATTCTGAGTAATACAGAATTTTCTCCATCATACAATACGTTTTAAAATTAATTGCATGCTATCGATCTAGTTTACTGCAGCGTGCAACAAGTATCTTACAGCAGCCACCGAGCAAACACACAGAGTAACGTTATAACATAATTTTCAATGCACTCAAATGTATCTAATATGATAAACAGAGCTGTGTTACCTCATACTCATGACCAGAAAAGCAGAAGCGGTGCCGGTGACTGTGACATAATAAAAGTTCCGCTGCTCGCAGCGTGTGTTGTGCAATCGCTCCAGCGGCCTCGTTCAGCTCCCACAACACTCGGTCCTGCTCTGCTTCATACTACAGTAACGTTAATAATCGCATCCATGAACATGATTTCTTCCCGAGTCCTATCCCAATTATTTCCACCGGCTGTGACATGAAGACCACATGTCCCAAGATTCCATGCTCAAACTTGGCGTCATCAAGCTACGCCTTTGTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193765 lncRNA upstream 4701 4355902 ~ 4356118 (+) True G170559
TU193760 lncRNA upstream 10941 4349638 ~ 4349878 (+) True G170554
TU193751 lncRNA upstream 25613 4334977 ~ 4335206 (+) True G170545
TU193741 lncRNA upstream 40831 4318600 ~ 4319988 (+) True G170537
TU193731 lncRNA upstream 139323 4221283 ~ 4221496 (+) True G170528
TU193769 lncRNA downstream 1418 4362728 ~ 4363122 (+) True G170563
TU193408 lncRNA downstream 44323 4405633 ~ 4409259 (+) True G170232
TU193381 lncRNA downstream 49045 4410355 ~ 4416851 (+) True G170205
TU193354 lncRNA downstream 82318 4443628 ~ 4446909 (+) True G170178
TU193399 lncRNA downstream 189185 4550495 ~ 4562847 (+) True G170223
CI01000034_04282490_04284734.mRNA mRNA upstream 75283 4282490 ~ 4285536 (+) True CI01000034_04282490_04284734
CI01000034_04260286_04274615.mRNA mRNA upstream 85417 4260286 ~ 4275402 (+) True CI01000034_04260286_04274615
CI01000034_04251494_04257594.mRNA mRNA upstream 102962 4251494 ~ 4257857 (+) True CI01000034_04251494_04257594
CI01000034_04244137_04250139.mRNA mRNA upstream 110226 4244137 ~ 4250593 (+) True CI01000034_04244137_04250139
CI01000034_04229970_04238150.mRNA mRNA upstream 122352 4229970 ~ 4238467 (+) True CI01000034_04229970_04238150
CI01000034_04364393_04367046.mRNA mRNA downstream 3004 4364314 ~ 4367204 (+) True CI01000034_04364393_04367046
CI01000034_04473631_04513799.mRNA mRNA downstream 112321 4473631 ~ 4514545 (+) True CI01000034_04473631_04513799
CI01000034_04525428_04534655.mRNA mRNA downstream 163691 4525001 ~ 4535684 (+) True CI01000034_04525428_04534655
CI01000034_04548660_04597274.mRNA mRNA downstream 187277 4548587 ~ 4597396 (+) True CI01000034_04548660_04597274
CI01000034_04641898_04648112.mRNA mRNA downstream 279716 4641026 ~ 4648150 (+) True CI01000034_04641898_04648112
TU193723 other upstream 162618 4194638 ~ 4194993 (+) True G170522
TU193699 other upstream 234008 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193348 other upstream 908970 3434136 ~ 3451849 (+) True G170172
TU192920 other upstream 2023129 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 2629642 1726510 ~ 1726632 (+) True G169586

Expression Profile