RNA id: TU193769


Basic Information

Item Value
RNA id TU193769
length 395
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G170563
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4362728 ~ 4363122 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAACAAGCTTCCATAGTTATGCATAATGTTTTGGTAGTCTCAACAGGGGAAAAGCAATTGCTGAAATGACCACTGTATGTAAAAAAAAAAAAAACACTGCATATCAACTTCCACCTGGAATTGCACCTACTTCTTCTCGGGAACCTTCACATTTGTATCACAGGAGCTCCAGACATTCAAGTGTCTGAAACAGGAGCCAAGAATCAGGGTGAGCCAACATTCTCTGTGGGGAGTATCAGAGCAGAGTGCTTGATTATCAGGCCTTTGTGTGTAAATGTAGGTAACATGCTGAGCCCAAGATATCCAGACACAGCAGGAGTGATGAGTCTGTCTGCTGGCTGGAGCTTCTCGTGAGGAGGTGGAGACCCTCTGATATCGCCATTAGCGGACCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193768 lncRNA upstream 1418 4360819 ~ 4361310 (+) True G170562
TU193765 lncRNA upstream 6610 4355902 ~ 4356118 (+) True G170559
TU193760 lncRNA upstream 12850 4349638 ~ 4349878 (+) True G170554
TU193751 lncRNA upstream 27522 4334977 ~ 4335206 (+) True G170545
TU193741 lncRNA upstream 42740 4318600 ~ 4319988 (+) True G170537
TU193408 lncRNA downstream 42511 4405633 ~ 4409259 (+) True G170232
TU193381 lncRNA downstream 47233 4410355 ~ 4416851 (+) True G170205
TU193354 lncRNA downstream 80506 4443628 ~ 4446909 (+) True G170178
TU193399 lncRNA downstream 187373 4550495 ~ 4562847 (+) True G170223
TU193787 lncRNA downstream 258717 4621839 ~ 4622328 (+) True G170579
CI01000034_04282490_04284734.mRNA mRNA upstream 77192 4282490 ~ 4285536 (+) True CI01000034_04282490_04284734
CI01000034_04260286_04274615.mRNA mRNA upstream 87326 4260286 ~ 4275402 (+) True CI01000034_04260286_04274615
CI01000034_04251494_04257594.mRNA mRNA upstream 104871 4251494 ~ 4257857 (+) True CI01000034_04251494_04257594
CI01000034_04244137_04250139.mRNA mRNA upstream 112135 4244137 ~ 4250593 (+) True CI01000034_04244137_04250139
CI01000034_04229970_04238150.mRNA mRNA upstream 124261 4229970 ~ 4238467 (+) True CI01000034_04229970_04238150
CI01000034_04364393_04367046.mRNA mRNA downstream 1192 4364314 ~ 4367204 (+) True CI01000034_04364393_04367046
CI01000034_04473631_04513799.mRNA mRNA downstream 110509 4473631 ~ 4514545 (+) True CI01000034_04473631_04513799
CI01000034_04525428_04534655.mRNA mRNA downstream 161879 4525001 ~ 4535684 (+) True CI01000034_04525428_04534655
CI01000034_04548660_04597274.mRNA mRNA downstream 185465 4548587 ~ 4597396 (+) True CI01000034_04548660_04597274
CI01000034_04641898_04648112.mRNA mRNA downstream 277904 4641026 ~ 4648150 (+) True CI01000034_04641898_04648112
TU193723 other upstream 164527 4194638 ~ 4194993 (+) True G170522
TU193699 other upstream 235917 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193348 other upstream 910879 3434136 ~ 3451849 (+) True G170172
TU192920 other upstream 2025038 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 2631551 1726510 ~ 1726632 (+) True G169586

Expression Profile