Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU193381 |
| length | 2425 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 3 |
| gene id | G170205 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 4410355 ~ 4416851 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU193408 | lncRNA | upstream | 1096 | 4405633 ~ 4409259 (+) | True | G170232 |
| TU193769 | lncRNA | upstream | 47233 | 4362728 ~ 4363122 (+) | True | G170563 |
| TU193768 | lncRNA | upstream | 49045 | 4360819 ~ 4361310 (+) | True | G170562 |
| TU193765 | lncRNA | upstream | 54237 | 4355902 ~ 4356118 (+) | True | G170559 |
| TU193760 | lncRNA | upstream | 60477 | 4349638 ~ 4349878 (+) | True | G170554 |
| TU193354 | lncRNA | downstream | 26777 | 4443628 ~ 4446909 (+) | True | G170178 |
| TU193399 | lncRNA | downstream | 133644 | 4550495 ~ 4562847 (+) | True | G170223 |
| TU193787 | lncRNA | downstream | 204988 | 4621839 ~ 4622328 (+) | True | G170579 |
| TU193834 | lncRNA | downstream | 290812 | 4707663 ~ 4707873 (+) | True | G170620 |
| TU193870 | lncRNA | downstream | 355455 | 4772306 ~ 4773521 (+) | True | G170644 |
| CI01000034_04364393_04367046.mRNA | mRNA | upstream | 43151 | 4364314 ~ 4367204 (+) | True | CI01000034_04364393_04367046 |
| CI01000034_04282490_04284734.mRNA | mRNA | upstream | 124819 | 4282490 ~ 4285536 (+) | True | CI01000034_04282490_04284734 |
| CI01000034_04260286_04274615.mRNA | mRNA | upstream | 134953 | 4260286 ~ 4275402 (+) | True | CI01000034_04260286_04274615 |
| CI01000034_04251494_04257594.mRNA | mRNA | upstream | 152498 | 4251494 ~ 4257857 (+) | True | CI01000034_04251494_04257594 |
| CI01000034_04244137_04250139.mRNA | mRNA | upstream | 159762 | 4244137 ~ 4250593 (+) | True | CI01000034_04244137_04250139 |
| CI01000034_04473631_04513799.mRNA | mRNA | downstream | 56780 | 4473631 ~ 4514545 (+) | True | CI01000034_04473631_04513799 |
| CI01000034_04525428_04534655.mRNA | mRNA | downstream | 108150 | 4525001 ~ 4535684 (+) | True | CI01000034_04525428_04534655 |
| CI01000034_04548660_04597274.mRNA | mRNA | downstream | 131736 | 4548587 ~ 4597396 (+) | True | CI01000034_04548660_04597274 |
| CI01000034_04641898_04648112.mRNA | mRNA | downstream | 224175 | 4641026 ~ 4648150 (+) | True | CI01000034_04641898_04648112 |
| CI01000034_04728112_04738169.mRNA | mRNA | downstream | 309998 | 4726849 ~ 4738327 (+) | True | CI01000034_04728112_04738169 |
| TU193723 | other | upstream | 212154 | 4194638 ~ 4194993 (+) | True | G170522 |
| TU193699 | other | upstream | 283544 | 4125100 ~ 4126811 (+) | True | CI01000034_04125435_04125780 |
| TU193348 | other | upstream | 958506 | 3434136 ~ 3451849 (+) | True | G170172 |
| TU192920 | other | upstream | 2072665 | 2317973 ~ 2337690 (+) | True | G169806 |
| TU192663 | other | upstream | 2679178 | 1726510 ~ 1726632 (+) | True | G169586 |
