RNA id: TU198743


Basic Information

Item Value
RNA id TU198743
length 276
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G174949
representative False

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 1613876 ~ 1614274 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCACAGTCAGTGATGGTTTGGGGTGCCATGTCATCTGCTGGTGTTGGTCCACTGTGTTTTCTGAGGTCCAAGGTCAATGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAAATGGCCAGCAAACTTGCCTGACCTTAACCCCATAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198696 lncRNA upstream 43397 1569917 ~ 1570479 (+) True G174916
TU198678 lncRNA upstream 155224 1396347 ~ 1458652 (+) True G174900
TU198603 lncRNA upstream 328893 1241797 ~ 1284983 (+) True G174828
TU198599 lncRNA upstream 374677 1238903 ~ 1239199 (+) True G174826
TU198598 lncRNA upstream 375937 1237701 ~ 1237939 (+) True G174825
TU198803 lncRNA downstream 137663 1751814 ~ 1755182 (+) True G175003
TU198804 lncRNA downstream 148643 1762794 ~ 1780869 (+) True G175004
TU199518 lncRNA downstream 417395 2031546 ~ 2060079 (+) True G175641
TU199551 lncRNA downstream 450021 2064172 ~ 2064536 (+) True G175670
TU199555 lncRNA downstream 459277 2073428 ~ 2073640 (+) True G175674
CI01000037_01098540_01104541.mRNA mRNA upstream 508690 1098072 ~ 1105186 (+) True CI01000037_01098540_01104541
CI01000037_01075201_01076456.mRNA mRNA upstream 537387 1073974 ~ 1076489 (+) True CI01000037_01075201_01076456
CI01000037_00987906_00988350.mRNA mRNA upstream 625504 987906 ~ 988372 (+) False CI01000037_00987906_00988350
CI01000037_00874555_00887437.mRNA mRNA upstream 725859 874487 ~ 888017 (+) True CI01000037_00874555_00887437
CI01000037_00808744_00809273.mRNA mRNA upstream 804003 808744 ~ 809873 (+) True CI01000037_00808744_00809273
CI01000037_01670886_01672687.mRNA mRNA downstream 56735 1670886 ~ 1673145 (+) False CI01000037_01670886_01672687
CI01000037_01674415_01677266.mRNA mRNA downstream 59942 1674093 ~ 1677305 (+) False CI01000037_01674415_01677266
CI01000037_01685225_01686624.mRNA mRNA downstream 71074 1685225 ~ 1686738 (+) True CI01000037_01685225_01686624
CI01000037_01690717_01697406.mRNA mRNA downstream 76566 1690717 ~ 1697794 (+) True CI01000037_01690717_01697406
CI01000037_01739245_01747048.mRNA mRNA downstream 124997 1739148 ~ 1747380 (+) True CI01000037_01739245_01747048
TU198421 other upstream 624117 989270 ~ 989759 (+) True G174689
TU198182 other upstream 1383480 228982 ~ 229587 (+) True G174501
TU198758 other downstream 58189 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU199493 other downstream 351591 1970185 ~ 1970391 (+) True G175626
TU200317 other downstream 1225609 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 1362711 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 2599132 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile