RNA id: TU199666


Basic Information

Item Value
RNA id TU199666
length 454
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G175777
representative False

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2412901 ~ 2413354 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAATGATGGGTCGACAGCATGGAGATCCATTTGCAGCTTTTATTAAGAATAGTGTATACACAGGTAAGGGCAGAGGCAGAGACGTAAACGGGAACAGGCAATGGTCGAGGCAGGCAGCAGACAAACGGTATCAGGAAGCAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTAAACAGGCAAGGATCAAGGCAGGCAGCAGAGAATCACAAGAGATAAACAGTCCAATCGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGAAATGATCACCGGGGCAAATCAAGACTTCGCAAAGGGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGCATGTGATTGGAAGGGAGGATTATGGGAAGTGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199654 lncRNA upstream 100190 2312207 ~ 2312711 (+) True G175769
TU199652 lncRNA upstream 109364 2302737 ~ 2303537 (+) True G175767
TU199502 lncRNA upstream 112551 2298327 ~ 2300350 (+) False G175630
TU199504 lncRNA upstream 112551 2298327 ~ 2300350 (+) True G175630
TU199498 lncRNA upstream 117045 2144062 ~ 2295856 (+) False G175628
TU199751 lncRNA downstream 193024 2606378 ~ 2609995 (+) True G175858
TU199765 lncRNA downstream 212050 2625404 ~ 2626599 (+) True G175871
TU199770 lncRNA downstream 222741 2636095 ~ 2636309 (+) True G175875
TU199772 lncRNA downstream 232485 2645839 ~ 2646168 (+) True G175877
TU199741 lncRNA downstream 256152 2669506 ~ 2715511 (+) True G175850
CI01000037_02405252_02406221.mRNA mRNA upstream 6464 2404783 ~ 2406437 (+) True CI01000037_02405252_02406221
CI01000037_02378066_02392175.mRNA mRNA upstream 20030 2378066 ~ 2392871 (+) True CI01000037_02378066_02392175
CI01000037_02334480_02338932.mRNA mRNA upstream 73912 2331464 ~ 2338989 (+) True CI01000037_02334480_02338932
CI01000037_02282458_02287205.mRNA mRNA upstream 125616 2281347 ~ 2287285 (+) True CI01000037_02282458_02287205
CI01000037_02279319_02280446.mRNA mRNA upstream 132145 2279158 ~ 2280756 (+) True CI01000037_02279319_02280446
CI01000037_02414352_02418569.mRNA mRNA downstream 998 2414352 ~ 2418752 (+) True CI01000037_02414352_02418569
CI01000037_02527352_02576225.mRNA mRNA downstream 112748 2526102 ~ 2576704 (+) True CI01000037_02527352_02576225
CI01000037_02700254_02707760.mRNA mRNA downstream 286241 2699595 ~ 2708474 (+) True CI01000037_02700254_02707760
CI01000037_02755842_02769590.mRNA mRNA downstream 342488 2755842 ~ 2771166 (+) True CI01000037_02755842_02769590
CI01000037_02907711_02908412.mRNA mRNA downstream 493709 2907063 ~ 2908634 (+) True CI01000037_02907711_02908412
TU199493 other upstream 442510 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 735494 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 798627 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 798627 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 1423142 989270 ~ 989759 (+) True G174689
TU200317 other downstream 426406 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 563508 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 1799929 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile