RNA id: TU200268


Basic Information

Item Value
RNA id TU200268
length 298
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G176297
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2799309 ~ 2799606 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAAGTATCGTTCTCCTGGCAACCGCCAAATCCAGACTCGTCCATCAGATTGCCAGACAGAGAAGCGTGATTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGCGGCGTGCTTTACACCACTGCATCCGACGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGCTGCTCGGCCATGGAAACCCATTCCATGAAGTTCTCTACGCACTGTTCTTGAGCTAATCTGAAGACCACACGAAGTTTGGAGGTCTGTAGCTATTGACTCTGCAGAGAGTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200265 lncRNA upstream 816 2798212 ~ 2798493 (+) True G176294
TU200262 lncRNA upstream 1225 2797401 ~ 2798084 (+) True G176292
TU200241 lncRNA upstream 11747 2786861 ~ 2787562 (+) True G176273
TU199740 lncRNA upstream 78339 2715672 ~ 2720970 (+) True G175849
TU199741 lncRNA upstream 83798 2669506 ~ 2715511 (+) True G175850
TU200274 lncRNA downstream 5717 2805323 ~ 2805550 (+) True G176303
TU200294 lncRNA downstream 23107 2822713 ~ 2823102 (+) True G176323
TU200299 lncRNA downstream 26376 2825982 ~ 2826307 (+) True G176328
TU200326 lncRNA downstream 50003 2849609 ~ 2849926 (+) True G176355
TU200328 lncRNA downstream 52772 2852378 ~ 2852726 (+) True G176357
CI01000037_02755842_02769590.mRNA mRNA upstream 28143 2755842 ~ 2771166 (+) True CI01000037_02755842_02769590
CI01000037_02700254_02707760.mRNA mRNA upstream 90835 2699595 ~ 2708474 (+) True CI01000037_02700254_02707760
CI01000037_02527352_02576225.mRNA mRNA upstream 222605 2526102 ~ 2576704 (+) True CI01000037_02527352_02576225
CI01000037_02414352_02418569.mRNA mRNA upstream 380557 2414352 ~ 2418752 (+) True CI01000037_02414352_02418569
CI01000037_02405252_02406221.mRNA mRNA upstream 392872 2404783 ~ 2406437 (+) True CI01000037_02405252_02406221
CI01000037_02907711_02908412.mRNA mRNA downstream 107457 2907063 ~ 2908634 (+) True CI01000037_02907711_02908412
CI01000037_02909777_02910445.mRNA mRNA downstream 109994 2909600 ~ 2910489 (+) True CI01000037_02909777_02910445
CI01000037_02965392_02966406.mRNA mRNA downstream 165786 2965392 ~ 2966433 (+) True CI01000037_02965392_02966406
CI01000037_03102630_03108094.mRNA mRNA downstream 303024 3102630 ~ 3109016 (+) True CI01000037_03102630_03108094
CI01000037_03120937_03121997.mRNA mRNA downstream 321331 3120937 ~ 3122022 (+) True CI01000037_03120937_03121997
TU199493 other upstream 828918 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 1121902 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 1185035 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 1185035 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 1809550 989270 ~ 989759 (+) True G174689
TU200317 other downstream 40154 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 177256 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 1413677 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile