RNA id: TU200317


Basic Information

Item Value
RNA id TU200317
length 294
RNA type TUCP
GC content 0.49
exon number 1
gene id G176346
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2839760 ~ 2840053 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGTCGTTCCAGAAGGAAGCCTCTTCTAAAGATAATGCACAAGAAAGCCCGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACATGGATTACTGGAACCATGTCCTGTGGTCTGATGAGACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCGGCAATCAAGTGAGGAGTACAAAGACAAGTGTATCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200299 lncRNA upstream 13453 2825982 ~ 2826307 (+) True G176328
TU200294 lncRNA upstream 16658 2822713 ~ 2823102 (+) True G176323
TU200274 lncRNA upstream 34210 2805323 ~ 2805550 (+) True G176303
TU200268 lncRNA upstream 40154 2799309 ~ 2799606 (+) True G176297
TU200265 lncRNA upstream 41267 2798212 ~ 2798493 (+) True G176294
TU200326 lncRNA downstream 9556 2849609 ~ 2849926 (+) True G176355
TU200328 lncRNA downstream 12325 2852378 ~ 2852726 (+) True G176357
TU200333 lncRNA downstream 22971 2863024 ~ 2863369 (+) True G176361
TU200442 lncRNA downstream 629449 3469502 ~ 3469710 (+) True G176466
TU200448 lncRNA downstream 637855 3477908 ~ 3478177 (+) True G176472
CI01000037_02755842_02769590.mRNA mRNA upstream 68594 2755842 ~ 2771166 (+) True CI01000037_02755842_02769590
CI01000037_02700254_02707760.mRNA mRNA upstream 131286 2699595 ~ 2708474 (+) True CI01000037_02700254_02707760
CI01000037_02527352_02576225.mRNA mRNA upstream 263056 2526102 ~ 2576704 (+) True CI01000037_02527352_02576225
CI01000037_02414352_02418569.mRNA mRNA upstream 421008 2414352 ~ 2418752 (+) True CI01000037_02414352_02418569
CI01000037_02405252_02406221.mRNA mRNA upstream 433323 2404783 ~ 2406437 (+) True CI01000037_02405252_02406221
CI01000037_02907711_02908412.mRNA mRNA downstream 67010 2907063 ~ 2908634 (+) True CI01000037_02907711_02908412
CI01000037_02909777_02910445.mRNA mRNA downstream 69547 2909600 ~ 2910489 (+) True CI01000037_02909777_02910445
CI01000037_02965392_02966406.mRNA mRNA downstream 125339 2965392 ~ 2966433 (+) True CI01000037_02965392_02966406
CI01000037_03102630_03108094.mRNA mRNA downstream 262577 3102630 ~ 3109016 (+) True CI01000037_03102630_03108094
CI01000037_03120937_03121997.mRNA mRNA downstream 280884 3120937 ~ 3122022 (+) True CI01000037_03120937_03121997
TU199493 other upstream 869369 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 1162353 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 1225486 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 1225486 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 1850001 989270 ~ 989759 (+) True G174689
TU200353 other downstream 136809 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 1373230 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile