RNA id: CI01000039_08214054_08244061.mRNA


Basic Information

Item Value
RNA id CI01000039_08214054_08244061.mRNA
length 3635
RNA type mRNA
GC content 0.51
exon number 29
gene id CI01000039_08214054_08244061
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8214037 ~ 8244061 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCCAGCAGGAATCTTTGAGCTGGTGGAAGTCGTGGGCAATGGCACCTACGGACAAGTGTACAAGGGTCGTCATGTTAAGACGGGTCAGCTGGCGGCCATAAAGGTCATGGATGTGACTGAGGAAGAGGAGGAGGAGATTAAAGCTGAGATTAACATGCTGAAGAAGTACAGTCACCATAGAAACATTGCCACCTACTACGGAGCCTTCGTCAAGAAGAGTCCGCCTGGACACGATGACCAGCTCTGGGGTCTGTCTCACCTCCATACTCACAAAGTCATCCACAGAGACATCAAGGGACAGAATGTACTGCTTACAGAGAATGCAGAGGTTAAACTCGTGGATTTTGGGGTGAGCGCACAGTTGGATCGTACAGTCGGCAGAAGAAACACTTTCATTGGCACTCCCTACTGGATGGCCCCAGAAGTCATTGCCTGTGATGAGAATCCTGACTCCACATATGATTACAGGAGTGATATCTGGTCTTTGGGAATCACCGCTATAGAGATGGCTGAAGGAGCACCGCCGTTGTGTGACATGCATCCTATGCGAGCTTTGTTCCTTATCCCACGGAACCCTCCTCCTAAACTGAAGTCCAAGAAATGGTCTAAGAAGTTTATTGACTTCATCGAGGGTTGTCTGGTGAAGTCATATCCAAGTCGTCCATCCACAGAACAGCTCCTGAAGCACTCGTTCATCAGAGACCAGCCCACTGAGAGACAGGTCCGCATCCAGCTCAAAGATCACATCGACCGCACACGCAAGAAACGCGGCGAAAAAGAGGAGACTGAATACGAGTACAGCGGTAGTGATGAAGAGGATGAGAACAGAGGAGATGAGAGAGAATCCAGCTCTATTTTGAATGTTCCTGGTGAGTCGACATTGCGGAGGGATTTCCTGCGGCTGCAGCAAGAGAATAAGGAGCGTTCAGAGGCCTTAAAACGACAGCAGGCGCAGCTCGCCGCTCAGCGCAGAGACCCTGAGGAGCACAAACGCCAGCTGCTGCATGACCGGCAGAAACGGATAGAGGAGCAGAAAGAACAGAGGCGTCGCTTAGAGGAGGAATATAAGCGTAAACAGCTGGAGGAGCAGAGACAGTCGGAGAGACTTCAGAGACAGCTGCAGCAGGAGCACGCGTACCTCGTCTCACTGCAGCAGCAGCAGCAACAAGACAAGAAACCACAGATGTACCACTACAGCAAGAACCTAGAGAACAACAAACCAGCCTGGGCTAGAGAGGTTGAGGAGCGCAGTAAACTGAACAGACAGGGCTCTCCCAAAATCTGCACTACAGTCTCTGACACCAACATCCAGTCCCGTTCAGAATCTATCAGCCAATCAGGAGCTTCACAGACTCCACCTATGCAGAGACCTGTAGAACCACAGGGTGGGCAAGGAAAGTTCCAGATGGCCCACCTGGTGCCGTTAAAACCATATGCCGCTCCTGTCCCTCGCTCTCAGTCTCTTTGCGATCAGCCCACTAAGACCATGTCCGCCTTCCCCACCCAGGATCCCTCTCCCACACCCACACCTCGTCCTCTACACTCCAGAGAACTAGTCCGTCAAAACTCTGACCCCACCTCAGAGACCCCCGCCCCTCAGTCTCGACCAATGAGAGATGACCGGGGACCCTGGATCCGTCTTCCTGAGATTGAACAACCTCCTAAAATTCCTCAGAGAACAGCCTCCATAGCCACTGCACTGAACACAAATCTCTCCTCCGGTATCAGGCACCCAGTCCGAGCAAGTAATCCTGATCTGAGTCGCAATGAGCGCTGGGAGAGAGGAGACAGCATGAGCATCATGTCCAACCTGCCACAGACCGGCTCTCTCGAGAGACACCGCATACTCAGCTCGTCCAAGATGGATTCCTCCCCCACCCTCTCTCATGACGGCCGACACAAACCAGGAGAATCCCGAACCTCATCAAGGCCCAGCAGGCCAGCGAGCTATAAGAGAGCAATAGGAGAGGACCATGGCCTGTACTCTAAGGAGCGGGCAGAGGAGCAGCCGCGACCCCCGGTGAAGGCTAATGACTACTCCTCTTCCTCAGAAAGCAGTGAAAGCAGTGAAGAGAGTGAGAGTGGAGAGGGAGCAGAAGAGGAAAGCCCTACTGACCGCCCACGTGATGCAGATTCTGACTCTGTAAACACTATGGTGGTCCATGAGGAGGAGGAAGGTGAAGGAGGAGATGAAGAACGTGCTGGAGGATATGGAGACCAAACCATGCTTGTACAGAGGACCCCAGAGAAGCGTAGTCATAATGGATACACCAACCTGCCTGATGTGGTTCAGCCCTCCCACTCTCCCACGGACTCGGCCTCCCACTCTTCTCCTGGGAAAGACTCTGCCTATGATTATCAGTCCAGGGGATTGGTGAAGGCCTCTGGAAAGTCCTCTTTTACTACTTTTGTGGACCTAGGAATGTACCAACCATCAGGGGGCACAGGAGATAACATGTCTGTTGGAGGTCTGGGCTCTCGTTTTGAGCAGCTGAAGCTGGAGGTGAGGAAAGGCTCTATGGTCAATGTCAATCCCACCAACACTCGTCCAGTTAGTGACACTCCTGAAATCCGCAAATACAAGAAGAGATTCAACTCTGAGATACTCTGTGCTGCTCTCTGGGATCTCTTTTCCAAACACGTCTTGCTGTCATCAGCTTGTCACTTGGCAGTCAAAAGTTATTTACAGCATTTTGCACAATGTGTGAATCTGCTGGTAGGGACAGAGAACGGTCTGAAGCTGCTGGATCGAAGTGGCCAGGGTAAAGTTTATCCACTGATCAACTCACGCAGGTTTCAGCAGATGGACGTTCTGGAGGGACTGAACCTCCTCATCACTATATCAGGCAAGAAGAATAAGGTGCGTGTGTATTATCTGGCCTGGCTGAGGAATAAAATCCTCCATAATGACCCAGAGGTGGAGAAGAAACAGGGCTGGACCACTGTAGGGGAAATGGAGGGCTGTGTCCACTACAAAGTGGTGAAATATGAAAGGATTAAGTTTCTGGTTATTGCTCTGAAGAATGCGGTGGAGGTTTACGCCTGGGCTCCCAAACCTTACCACAAATTCATGGCCTTCAAGTCATTTGGAGACCTGCCACATAGGCCTCTGTTGGTTGACCTCACAGTGGAAGAGGGTCAGAGGTTAAAAGTCATCTATGGGTCATGTGCTGGCTTCCATGCCATTGACGTCGACTCTGGAAACAACTATGACATCTACATTCCTGTACATATCCAGTCACAGGTGATTCCTCACGCCATTGTATTCCTGCCCAATTCAGATGGGATGGAGATGCTGTTGTGTTATGAGGATGAGGGTGTTTATGTCAACACGTACGGACGCATCATTAAAGATGTTGTGCTGCAGTGGGGAGAAATGCCCACATCAGTGGCCCACATTTGCTCTAATCAGATTATGGGCTGGGGAGAAAAAGCCATTGAGATCCGTTCTGTTGAGACGGGACACCTTGATGGAGTCTTCATGCACAAGAGAGCTCAGAGGCTTAAGTTCCTGTGTGAAAGAAATGACAAGGTGTTTTTTGCGTCAGTACGTTCTGGCGGCAGCAGTCAGGTCTACTTTATGACCCTCAACAGAAACTGCATTATGAATTGGTGAAAGAGCTGCCACATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04413 MINK; misshapen/NIK-related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208098 lncRNA downstream 5631 8207049 ~ 8208406 (-) True G183244
TU208127 lncRNA downstream 9252 8201837 ~ 8204785 (-) True G183273
TU208217 lncRNA downstream 13997 8199813 ~ 8200040 (-) True G183355
TU208216 lncRNA downstream 14268 8199280 ~ 8199769 (-) True G183354
TU208215 lncRNA downstream 15171 8198561 ~ 8198866 (-) True G183353
TU208222 lncRNA upstream 77950 8322011 ~ 8322230 (-) True G183360
TU208223 lncRNA upstream 78214 8322275 ~ 8322583 (-) True G183361
TU208224 lncRNA upstream 79426 8323487 ~ 8323696 (-) True G183362
TU208114 lncRNA upstream 93798 8337859 ~ 8338716 (-) True G183260
CI01000039_08189467_08193070.mRNA mRNA downstream 20967 8189282 ~ 8193070 (-) True CI01000039_08189467_08193070
CI01000039_08175148_08187608.mRNA mRNA downstream 26429 8174983 ~ 8187608 (-) True CI01000039_08175148_08187608
CI01000039_08160613_08163045.mRNA mRNA downstream 50992 8160480 ~ 8163045 (-) True CI01000039_08160613_08163045
CI01000039_08131887_08142840.mRNA mRNA downstream 68925 8130840 ~ 8145112 (-) True CI01000039_08131887_08142840
CI01000039_08127858_08129554.mRNA mRNA downstream 84348 8127613 ~ 8129689 (-) True CI01000039_08127858_08129554
CI01000039_08253442_08273324.mRNA mRNA upstream 9255 8253316 ~ 8273324 (-) True CI01000039_08253442_08273324
CI01000039_08280981_08287465.mRNA mRNA upstream 36866 8280927 ~ 8287465 (-) True CI01000039_08280981_08287465
CI01000039_08306377_08310855.mRNA mRNA upstream 61847 8305908 ~ 8310855 (-) True CI01000039_08306377_08310855
CI01000039_08311824_08317719.mRNA mRNA upstream 67009 8311070 ~ 8317719 (-) True CI01000039_08311824_08317719
CI01000039_08333043_08344467.mRNA mRNA upstream 88855 8332916 ~ 8345115 (-) True CI01000039_08333043_08344467
TU208115 other downstream 238992 7972116 ~ 7975045 (-) True G183261
TU207766 other downstream 1076270 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1565461 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1578837 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1705604 6507955 ~ 6508433 (-) True G182771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060720 False 8343 mRNA 0.45 31 NC_007116.7 38301906 ~ 38384755 (-)
bowfin (Amia calva) AMCG00014500 True 7313 mRNA 0.46 30 CM030128.1 15823276 ~ 15870879 (+)