RNA id: TU207225


Basic Information

Item Value
RNA id TU207225
length 354
RNA type TUCP
GC content 0.52
exon number 1
gene id G182470
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 5636058 ~ 5636764 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGCCAAGGTAACCCAGAGAAGATGTACCCGTGTGCCTTTTATTCAAGGAAAATGTCGGCGGCTGAACGTAATTACGATGTGGGCAATCGGGAATTACTGGCTATGAAGGCAGCACTGGAGGAGTGGCGTCACTGGCTGGAGGGAGCAAAACATCCGTTCACCATTCTCACAGACCATAAAAACCTGGAATACCTGCGTTCCGCCAAGCGTCTAAATCCACGGCAAGCTAGATGGGCCTTGTTCTTCACACGCTTCCAGTTCTCGGTAACTTATAGACCAGGCTCTAAGAACACCAAGGCAGACGCGCTGTCACGGCAGCATGAGGAGGTGGAACGGACAGAGAACGCAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207172 lncRNA downstream 98141 5537847 ~ 5538106 (-) True G182428
TU207170 lncRNA downstream 99558 5536334 ~ 5536689 (-) True G182426
TU207120 lncRNA downstream 100050 5535889 ~ 5536197 (-) True G182376
TU207155 lncRNA downstream 140845 5494209 ~ 5495402 (-) True G182411
TU207107 lncRNA downstream 236473 5399049 ~ 5399774 (-) True G182365
TU207227 lncRNA upstream 2944 5639544 ~ 5639819 (-) True G182472
TU207202 lncRNA upstream 16612 5653212 ~ 5657120 (-) True G182454
TU207348 lncRNA upstream 238145 5874745 ~ 5875354 (-) True G182583
TU207359 lncRNA upstream 282119 5918719 ~ 5918984 (-) True G182594
TU207399 lncRNA upstream 307547 5944147 ~ 5944355 (-) True G182624
CI01000039_05564105_05568438.mRNA mRNA downstream 67527 5562972 ~ 5568720 (-) True CI01000039_05564105_05568438
CI01000039_05428966_05446948.mRNA mRNA downstream 189299 5427932 ~ 5446948 (-) True CI01000039_05428966_05446948
CI01000039_05327866_05343471.mRNA mRNA downstream 292776 5326608 ~ 5343471 (-) True CI01000039_05327866_05343471
CI01000039_05298355_05313755.mRNA mRNA downstream 322459 5298201 ~ 5313788 (-) True CI01000039_05298355_05313755
CI01000039_05231247_05234144.mRNA mRNA downstream 402103 5231099 ~ 5234144 (-) True CI01000039_05231247_05234144
CI01000039_05691143_05694780.mRNA mRNA upstream 53518 5690118 ~ 5695149 (-) True CI01000039_05691143_05694780
CI01000039_05696229_05731472.mRNA mRNA upstream 59005 5695605 ~ 5731659 (-) True CI01000039_05696229_05731472
CI01000039_05751997_05758120.mRNA mRNA upstream 114026 5750626 ~ 5758589 (-) True CI01000039_05751997_05758120
CI01000039_05760536_05772459.mRNA mRNA upstream 123093 5759693 ~ 5772459 (-) True CI01000039_05760536_05772459
CI01000039_05783946_05787740.mRNA mRNA upstream 146740 5783340 ~ 5787740 (-) True CI01000039_05783946_05787740
TU207128 other downstream 166959 5456491 ~ 5469288 (-) True G182384
TU205518 other downstream 1145188 4490458 ~ 4491059 (-) True CI01000039_04478095_04490812
TU205490 other downstream 1246718 4384866 ~ 4389529 (-) True G180953
TU205375 other downstream 1393843 4240367 ~ 4242404 (-) False CI01000039_04240525_04242132
TU207563 other upstream 871355 6507955 ~ 6508433 (-) True G182771
TU207627 other upstream 997947 6634547 ~ 6635200 (-) True G182827
TU207638 other upstream 1010927 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207766 other upstream 1497507 7134107 ~ 7134198 (-) True G182956
TU208115 other upstream 2335516 7972116 ~ 7975045 (-) True G183261

Expression Profile