RNA id: TU207627


Basic Information

Item Value
RNA id TU207627
length 654
RNA type TUCP
GC content 0.54
exon number 1
gene id G182827
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6634547 ~ 6635200 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGGGTTATGACCGATCTTGGACCTGCGAGTTTTGAATCGGAGCCTCCACAAGCTACCGTTCAAAATGCTCACGCAGAAACGCATTTTCGAGTGCATCCGTCCCCAAGATTCGTTTGCAGCGATCGACCTAAAGGACTTTCATGTCTCGATTCTACCTCGACACAGGCCGTTCCTGCGCTTTGCCTTCGAGGGTCGGGCATATCAGTACAAGGTCCTACATTTCAGGCTGGCCCTGTCTCCCCGCGTCTTCATGAAGGTCGTGGAGGGAGCCTTTGTTCCCATGAGAGAACAGGGTGTTCGCATCCTCAACTATCTCGAGGACTGGCTTATTTTGGCGCAGTCTCGGGTTCATTTGTGCGAACACAGGGATCTGGTGCTCAGTCACCTCAGCCAGTTGGGCCTTCAGGTCAACTGGGACAAGAGCAAACTCTCCCCTGTGCAGAGGATCTCTTTTCTCGGTATGGAGTTGGATTCAGTCGAACAGACAGCACGCCTCACAGAGGAACGTGCTCAGTCGGTGTTGAACTGCCTGAATACGTTCAAAGGCAGGACATGCTGTGGTGTTCACAGATGCCTCTGCCGCCGGCTGGGGTGCCACGTACAATGGGCATGCAGTATCAGGGGTTTGGATGGGCCCCCAACTGCATTGGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207626 lncRNA downstream 603 6633378 ~ 6633944 (-) True G182826
TU207625 lncRNA downstream 2803 6631285 ~ 6631744 (-) True G182825
TU207624 lncRNA downstream 3720 6630564 ~ 6630827 (-) True G182824
TU207623 lncRNA downstream 4137 6629732 ~ 6630410 (-) True G182823
TU207622 lncRNA downstream 4829 6628972 ~ 6629718 (-) True G182822
TU207630 lncRNA upstream 1726 6636926 ~ 6637173 (-) True G182829
TU207631 lncRNA upstream 2262 6637462 ~ 6637939 (-) True G182830
TU207632 lncRNA upstream 8086 6643286 ~ 6643492 (-) True G182831
TU207633 lncRNA upstream 8519 6643719 ~ 6644038 (-) True G182832
TU207634 lncRNA upstream 9715 6644915 ~ 6645144 (-) True G182833
CI01000039_06561801_06580642.mRNA mRNA downstream 53784 6560357 ~ 6580763 (-) True CI01000039_06561801_06580642
CI01000039_06507869_06512333.mRNA mRNA downstream 122214 6507758 ~ 6512333 (-) True CI01000039_06507869_06512333
CI01000039_06444483_06468488.mRNA mRNA downstream 166059 6442364 ~ 6468488 (-) True CI01000039_06444483_06468488
CI01000039_06361313_06381595.mRNA mRNA downstream 252890 6360806 ~ 6381657 (-) True CI01000039_06361313_06381595
CI01000039_06347202_06354469.mRNA mRNA downstream 280078 6347024 ~ 6354469 (-) True CI01000039_06347202_06354469
CI01000039_06647926_06651530.mRNA mRNA upstream 11510 6646710 ~ 6653449 (-) False CI01000039_06647926_06651530
CI01000039_06702521_06707733.mRNA mRNA upstream 66406 6701606 ~ 6707733 (-) True CI01000039_06702521_06707733
CI01000039_06833672_06856433.mRNA mRNA upstream 198390 6833590 ~ 6856730 (-) True CI01000039_06833672_06856433
CI01000039_06990836_06994541.mRNA mRNA upstream 354886 6990086 ~ 6994915 (-) True CI01000039_06990836_06994541
CI01000039_07006878_07015672.mRNA mRNA upstream 371109 7006309 ~ 7016273 (-) True CI01000039_07006878_07015672
TU207563 other downstream 126114 6507955 ~ 6508433 (-) True G182771
TU207224 other downstream 997783 5636058 ~ 5636764 (-) False G182470
TU207225 other downstream 997947 5636247 ~ 5636600 (-) True G182470
TU207128 other downstream 1165259 5456491 ~ 5469288 (-) True G182384
TU205518 other downstream 2143488 4490458 ~ 4491059 (-) True CI01000039_04478095_04490812
TU207638 other upstream 12327 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207766 other upstream 498907 7134107 ~ 7134198 (-) True G182956
TU208115 other upstream 1336916 7972116 ~ 7975045 (-) True G183261

Expression Profile