RNA id: TU208216


Basic Information

Item Value
RNA id TU208216
length 490
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G183354
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8199280 ~ 8199769 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGATGTGTAGTGTTTGAAATCGGGTATAAATGGGTTAGAAATAGCCTTAGGATCAAACATTATTTATTTATTAACCTATTGTTTTTTCCTTTTGTGCAGTGGTGTTATATTATTGTCAGCACTATGTAAAATAATACGACTTCATGCATTAATCATGACTTGAGGGGGCTGTCAGCTGATAAGCACCAAACAAGGCCACCGCCTCGGAGTAGGCAAATGTTTTCTCCGTCTTTATGAAACACAGGTAAAATGTTTTCTACGACTATTTTACAGGCAGATGTGGAAACAGCATATTGCATTCGGCTTCCATCATCACGTTGCCGCAGAATGGCGTGTCTACGGAACCATTTTCGGTTAAACCAACTTTCCATTTCATTACCGACACAAACGCGCCAATGATCATATGTGTTCAGTGGATTTCTGTCCATGTACTAGACGGAATTCTGATAGCATTAACTATAAAGAATTGTCAGGCTTGGCCCCACCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208215 lncRNA downstream 414 8198561 ~ 8198866 (-) True G183353
TU208214 lncRNA downstream 740 8198319 ~ 8198540 (-) True G183352
TU208129 lncRNA downstream 1759 8195978 ~ 8197521 (-) True G183275
TU208212 lncRNA downstream 34260 8164790 ~ 8165020 (-) True G183350
TU208120 lncRNA downstream 81135 8115579 ~ 8118145 (-) True G183266
TU208217 lncRNA upstream 44 8199813 ~ 8200040 (-) True G183355
TU208127 lncRNA upstream 2068 8201837 ~ 8204785 (-) True G183273
TU208098 lncRNA upstream 7280 8207049 ~ 8208406 (-) True G183244
TU208222 lncRNA upstream 122242 8322011 ~ 8322230 (-) True G183360
TU208223 lncRNA upstream 122506 8322275 ~ 8322583 (-) True G183361
CI01000039_08189467_08193070.mRNA mRNA downstream 6210 8189282 ~ 8193070 (-) True CI01000039_08189467_08193070
CI01000039_08175148_08187608.mRNA mRNA downstream 11672 8174983 ~ 8187608 (-) True CI01000039_08175148_08187608
CI01000039_08160613_08163045.mRNA mRNA downstream 36235 8160480 ~ 8163045 (-) True CI01000039_08160613_08163045
CI01000039_08131887_08142840.mRNA mRNA downstream 54168 8130840 ~ 8145112 (-) True CI01000039_08131887_08142840
CI01000039_08127858_08129554.mRNA mRNA downstream 69591 8127613 ~ 8129689 (-) True CI01000039_08127858_08129554
CI01000039_08214054_08244061.mRNA mRNA upstream 14268 8214037 ~ 8244061 (-) True CI01000039_08214054_08244061
CI01000039_08253442_08273324.mRNA mRNA upstream 53547 8253316 ~ 8273324 (-) True CI01000039_08253442_08273324
CI01000039_08280981_08287465.mRNA mRNA upstream 81158 8280927 ~ 8287465 (-) True CI01000039_08280981_08287465
CI01000039_08306377_08310855.mRNA mRNA upstream 106139 8305908 ~ 8310855 (-) True CI01000039_08306377_08310855
CI01000039_08311824_08317719.mRNA mRNA upstream 111301 8311070 ~ 8317719 (-) True CI01000039_08311824_08317719
TU208115 other downstream 224235 7972116 ~ 7975045 (-) True G183261
TU207766 other downstream 1061513 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1550704 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1564080 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1690847 6507955 ~ 6508433 (-) True G182771

Expression Profile