RNA id: TU232006


Basic Information

Item Value
RNA id TU232006
length 261
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G204401
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 268556 ~ 268816 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCAACTTGGGCGGTGGCTACTTCTTGGGCAGCACTACGTGGTGTGCCCCTCTCTGAGATATGTGCAGCAGCTACATGGGCATCACCTTGTACATTCACAAGATTTTATAGAATCAGTGTGGCCCCCATTCCTTTGGTCAGTACTGCTGTATTATCAGACAGCATTTAGGTGGGTGTAGTCTTTGTGACTTGGTTGTATTCGTCTTCCACTATGTTCGACCGTCTCTGTCGGTCTGTAACAGTGAAATAGAATGCTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232003 lncRNA upstream 3878 264468 ~ 264678 (+) True CI01000048_00261577_00264226
TU232001 lncRNA upstream 5080 263174 ~ 263476 (+) True G204396
TU231992 lncRNA upstream 12013 255979 ~ 256543 (+) True G204390
TU231981 lncRNA upstream 38507 229746 ~ 230049 (+) True G204379
TU231973 lncRNA upstream 44195 216170 ~ 224361 (+) True G204373
TU232007 lncRNA downstream 2158 270974 ~ 271195 (+) True G204402
TU232008 lncRNA downstream 2673 271489 ~ 271703 (+) True G204403
TU232009 lncRNA downstream 4732 273548 ~ 274177 (+) True G204404
TU231995 lncRNA downstream 7573 276389 ~ 277723 (+) False G204392
TU231996 lncRNA downstream 7616 276432 ~ 277723 (+) False G204392
CI01000048_00261577_00264226.mRNA mRNA upstream 3014 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00149401_00154452.mRNA mRNA upstream 114104 149401 ~ 154452 (+) True CI01000048_00149401_00154452
CI01000048_00036432_00113057.mRNA mRNA upstream 155499 36432 ~ 113057 (+) True CI01000048_00036432_00113057
CI01000048_00005001_00005627.mRNA mRNA upstream 262539 5001 ~ 6017 (+) True CI01000048_00005001_00005627
CI01000048_00403297_00404487.mRNA mRNA downstream 134416 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00425103_00519682.mRNA mRNA downstream 156287 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00567988_00568484.mRNA mRNA downstream 299172 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00659494_00667971.mRNA mRNA downstream 390206 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00693752_00694265.mRNA mRNA downstream 424256 693072 ~ 694348 (+) False CI01000048_00693752_00694265
TU231798 other upstream 204959 63188 ~ 63597 (+) True G204233
TU232014 other downstream 16454 285270 ~ 285747 (+) True G204409
TU232089 other downstream 92209 361025 ~ 361661 (+) True G204472
TU232180 other downstream 391903 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232496 other downstream 724639 993455 ~ 993969 (+) False G204824
TU232648 other downstream 945556 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546

Expression Profile