RNA id: TU232007


Basic Information

Item Value
RNA id TU232007
length 222
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G204402
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 270974 ~ 271195 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGACGCTTCTCTGCCCACTTGCTGTCCGCCCCACCAGCCCAACGATTGTGCTGGAGAGCCTCTGACCACAAGTCATAGGTACAGGATAATGTTCATAGTCAAGTCATCTTCATTTCTGTAGCACTTTATACAAAACAGCTGCACAGTAATAAACATGAAAGTAAACATGAATTTAAATATAAAGGCCAAATTACAGTTTTTTTGTTTTGTTTTGTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232006 lncRNA upstream 2158 268556 ~ 268816 (+) True G204401
TU232003 lncRNA upstream 6296 264468 ~ 264678 (+) True CI01000048_00261577_00264226
TU232001 lncRNA upstream 7498 263174 ~ 263476 (+) True G204396
TU231992 lncRNA upstream 14431 255979 ~ 256543 (+) True G204390
TU231981 lncRNA upstream 40925 229746 ~ 230049 (+) True G204379
TU232008 lncRNA downstream 294 271489 ~ 271703 (+) True G204403
TU232009 lncRNA downstream 2353 273548 ~ 274177 (+) True G204404
TU231995 lncRNA downstream 5194 276389 ~ 277723 (+) False G204392
TU231996 lncRNA downstream 5237 276432 ~ 277723 (+) False G204392
TU231997 lncRNA downstream 5237 276432 ~ 277902 (+) True G204392
CI01000048_00261577_00264226.mRNA mRNA upstream 5432 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00149401_00154452.mRNA mRNA upstream 116522 149401 ~ 154452 (+) True CI01000048_00149401_00154452
CI01000048_00036432_00113057.mRNA mRNA upstream 157917 36432 ~ 113057 (+) True CI01000048_00036432_00113057
CI01000048_00005001_00005627.mRNA mRNA upstream 264957 5001 ~ 6017 (+) True CI01000048_00005001_00005627
CI01000048_00403297_00404487.mRNA mRNA downstream 132037 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00425103_00519682.mRNA mRNA downstream 153908 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00567988_00568484.mRNA mRNA downstream 296793 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00659494_00667971.mRNA mRNA downstream 387827 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00693752_00694265.mRNA mRNA downstream 421877 693072 ~ 694348 (+) False CI01000048_00693752_00694265
TU231798 other upstream 207377 63188 ~ 63597 (+) True G204233
TU232014 other downstream 14075 285270 ~ 285747 (+) True G204409
TU232089 other downstream 89830 361025 ~ 361661 (+) True G204472
TU232180 other downstream 389524 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232496 other downstream 722260 993455 ~ 993969 (+) False G204824
TU232648 other downstream 943177 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546

Expression Profile